相关实验视频
Updated: Jun 16, 2025

07:05
Single-Molecule Imaging of EWS-FLI1 Condensates Assembling on DNA
Published on: September 8, 2021
2.4K
转录因子结合如何刺激转录性爆发
Anupam Mondal1,2, Anatoly B Kolomeisky1,2,3
1Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, United States.
The journal of physical chemistry letters
|August 20, 2024
概括
转录因子 (TF) 的结合动态影响基因表达的爆发. 较强的TF结合会延长爆发时间,但会降低变异性,而最佳的结合点则会最大限度地提高噪声,从而使细胞适应.
科学领域:
- 分子生物学分子生物学
- 生物物理学的生物物理.
- 系统生物学 系统生物学
背景情况:
- 基因转录通常发生在随机爆发中.
- 与DNA结合的转录因子 (TF) 与转录活性相关.
- 目前尚不完全了解TF驱动的转录突破背后的分子机制.
研究的目的:
- 研究转录因子结合动态如何影响转录突破.
- 开发一个分析TF驱动基因表达的理论框架.
- 量化解释对转录性爆发的实验观测.
主要方法:
- 开发了一个包含TF交换和绑定动态的最小理论模型.
- 使用分析计算和蒙特卡洛计算机模拟.
- 纳入TF-DNA相互作用的物理化学特征.
主要成果:
- 转录突破的动态取决于TF结合强度和结合位数.
- 更强的TF结合延长了爆发时间,但减少了波动性.
- 最佳的结合点数量最大化了转录噪声,有助于细胞适应.
结论:
- 理论模型量化地解释了对转录突破的实验观测.
- TF结合动力学是基因表达变异性的关键调节者.
- 为了解复杂的基因调节机制提供了一个理论工具.
更多相关视频
相关概念视频
Transcription Factors
75.7K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
75.7K
Eukaryotic Transcription Activators
10.9K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
10.9K
Transcription Elongation Factors
10.8K
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
10.8K
RNA Polymerase II Accessory Proteins
9.1K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.1K
General Transcription Factors
5.2K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.2K
Bacterial Transcription
28.1K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
28.1K

