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相关概念视频

Transcription Initiation01:47

Transcription Initiation

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Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
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Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

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RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
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Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

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Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
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Transfer RNA Synthesis02:36

Transfer RNA Synthesis

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One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
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RNA Editing02:23

RNA Editing

8.9K
RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
8.9K
Nucleic Acid Structure01:25

Nucleic Acid Structure

6.1K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
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High-throughput Purification of Affinity-tagged Recombinant Proteins
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人类线粒体RNA聚合酶对基质的结合和选择的结构基础.

Karl Herbine1, Ashok R Nayak1, Dmitry Temiakov2

  • 1Department of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locust St, Philadelphia, PA, 19107, USA.

Nature communications
|August 20, 2024
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概括

人类线粒体RNA聚合酶 (mtRNAP) 使用结构机制选择基质. 电子显微镜揭示了mtRNAP如何区分核酸类型以实现准确的转录.

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科学领域:

  • 分子生物学分子生物学
  • 结构生物学 结构生物学
  • 生物化学 生化学

背景情况:

  • 精确的转录依赖于RNA聚合酶 (RNAP) 正确选择基质并区分脱氧核酸和核酸.
  • 了解这些选择机制对于在转录过程中保持遗传信息忠实性至关重要.

研究的目的:

  • 阐明由人类线粒体RNA聚合酶 (mtRNAP) 进行基质选择和歧视的结构基础.
  • 研究转录延长复合体中核酸三酸盐 (NTP) 结合和选择的机制.

主要方法:

  • 使用冷电子显微镜 (cryo-EM) 来确定人类mtRNAP延长复合物的高分辨率结构.
  • 在mtRNAP活性部位内分析基质结合部位,包括进入部位和插入部位.

主要成果:

  • 冷EM结构揭示了腺三酸盐 (ATP) 结合在mtRNAP的进入和插入部位.
  • 进入地点的相互作用对核化物及其酸衍生物有歧视性,但不对非同类的rNTP和dNTP有歧视性.
  • 观察到一种独特的mtRNAP构造,用于从活性部位拒绝非同源基质.

结论:

  • 这项研究为单个亚单元RNAP中的基质结合和NTP选择奠定了结构基础.
  • 研究结果表明,这些酶采用了统一的NTP选择机制.