MSH3同质性和潜在的重组链接到SARS-CoV-2的Furin分离部位
Balamurali K Ambati1, Akhil Varshney2, Kenneth Lundstrom3
1Knight's Campus for Accelerating Scientific Impact, University of Oregon, Eugene, OR, United States.
Frontiers in virology (Lausanne, Switzerland)
|August 23, 2024
概括
SARS-CoV-2 病毒含有独特的 19 核酸序列,与人类 MSH3 mRNA 的反向补充相匹配. 这一不寻常的发现,包括furin裂变部位 (FCS),需要进一步调查其起源.
科学领域:
- 病毒学 病毒学
- 分子生物学分子生物学
- 基因组学就是基因组学.
背景情况:
- 在SARS-CoV-2基因组中,与蝙蝠RaTG13.3等相关的冠状病毒存在许多差异.
- 一个值得注意的区别是SARS-CoV-2中的12核酸裂部位 (FCS),比典型的插入要长得多.
研究的目的:
- 调查SARS-CoV-2基因组内特定的19核酸序列的起源和意义.
- 探索这种序列存在的潜在解释,特别是它与FCS的关系.
主要方法:
- 利用BLAST搜索将SARS-CoV-2基因组序列与已知的数据库进行比较.
- 分析了SARS-CoV-2基因组区域和专有序列之间的互补性.
主要成果:
- 包括FCS在内的SARS-CoV-2基因组的19个核酸段显示出100%的互补性,与编码子优化的人类MSH3mRNA序列的逆补.
- 在中间宿主中进行重组被认为是这一发现的不太可能解释.
结论:
- 在SARS-CoV-2序列和MSH3 mRNA的反向补充之间100%的相同性是非常不寻常的.
- 提出了潜在的机制,例如病毒复制过程中拷贝选择重组,但需要进一步研究.
相关概念视频
Conservative Site-specific Recombination and Phase Variation
6.0K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
6.0K
Homologous Recombination
50.3K
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
50.3K
Crossing Over
4.2K
Crossing over is the exchange of genetic information between homologous chromosomes during prophase I of meiosis I. Genetic recombination gives rise to allelic diversity in the newly formed daughter cells. In humans, crossing over produces genetically distinct haploid egg and sperm cells that undergo fertilization to produce unique offspring. Before cell division starts, the germ cell’s chromosome(s) undergo duplication in the S phase of the cell cycle. As the cells enter prophase I,...
4.2K
Exon Recombination
3.6K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.6K
Mismatch Repair
4.8K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
4.8K
Gene Conversion
9.7K
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
9.7K


