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相关概念视频

DNA Microarrays02:34

DNA Microarrays

17.2K
Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
17.2K
RNA-seq03:21

RNA-seq

9.9K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.9K
Heterochromatin02:38

Heterochromatin

11.7K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
11.7K

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相关实验视频

Updated: Jun 15, 2025

DNA-affinity-purified Chip DAP-chip Method to Determine Gene Targets for Bacterial Two component Regulatory Systems
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DNA-affinity-purified Chip DAP-chip Method to Determine Gene Targets for Bacterial Two component Regulatory Systems

Published on: July 21, 2014

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GCOC:基于相似性的芯片上的基因组分类器 搜索内容 可定位存储器

Yuval Harary, Paz Snapir, Shir Siman Tov

    IEEE transactions on biomedical circuits and systems
    |August 28, 2024
    PubMed
    概括

    芯片上的GCOC系统 (SoC) 使用k-mer匹配进行快速的基因组分类. 这种节能硬件在便携式应用中实现了实时DNA分析的高吞吐量.

    科学领域:

    • 基因组学就是基因组学.
    • 生物信息学是一种生物信息学.
    • 计算机工程 计算机工程

    背景情况:

    • 基因组分类对于生物研究和诊断至关重要.
    • 现有的方法往往缺乏实时,便携式应用所需的速度和效率.
    • K-mer匹配是一种用于序列比较的常见技术.

    研究的目的:

    • 开发和评估一款用于高效基因组分类的新型芯片系统 (SoC).
    • 评估GCOC平台的性能,功耗和区域.
    • 为了证明实时,便携式DNA分类的可行性.

    主要方法:

    • 设计和制造了一种基因组分类系统在芯片上 (GCOC),使用65nm工艺.
    • 使用k-mer匹配与相似性,或近似搜索能力的内容可定位存储器 (SAS-CAM) 进行分类.
    • 使用嵌入式RISC-V处理器进行受控分类操作.

    主要成果:

    • GCOC的分类速度是每秒读取769.2K短DNA的速度.
    • 该 SoC 的面积为 3.12 mm2,功耗为 1.27 mW.
    • 该系统支持精确和近似 (耐受边距离) k-mer匹配.

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    Generation of a Human iPSC-Based Blood-Brain Barrier Chip
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    Generation of a Human iPSC-Based Blood-Brain Barrier Chip

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    Technical Demonstration of Whole Genome Array Comparative Genomic Hybridization
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    Technical Demonstration of Whole Genome Array Comparative Genomic Hybridization

    Published on: August 5, 2008

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    相关实验视频

    Last Updated: Jun 15, 2025

    DNA-affinity-purified Chip DAP-chip Method to Determine Gene Targets for Bacterial Two component Regulatory Systems
    12:24

    DNA-affinity-purified Chip DAP-chip Method to Determine Gene Targets for Bacterial Two component Regulatory Systems

    Published on: July 21, 2014

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    Generation of a Human iPSC-Based Blood-Brain Barrier Chip
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    Generation of a Human iPSC-Based Blood-Brain Barrier Chip

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    Technical Demonstration of Whole Genome Array Comparative Genomic Hybridization
    16:37

    Technical Demonstration of Whole Genome Array Comparative Genomic Hybridization

    Published on: August 5, 2008

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    结论:

    • GCOC平台为基因组分类提供了一个高效和节能的解决方案.
    • 它的性能特性使其适合在便携式实时应用中部署,例如护理点诊断.
    • 开发的SoC解决了对快速,易于操作和低功耗基因组分析工具的需求.