进化蛋白质多功能性的内在障碍和其他可形库
Asifa Aftab1, Souradeep Sil2, Seema Nath3
1Department of Zoology, Asutosh College, (affiliated with University of Calcutta), Kolkata, 700026, India.
Journal of molecular evolution
|August 30, 2024
概括
蛋白质的多功能性通过结构的灵活性进化,特别是通过内在无序的蛋白质/区域 (IDPs/IDRs). 本综述探讨了动态结构如何使蛋白质能够执行多种功能,从而挑战传统观点.
科学领域:
- 生物化学 生物化学
- 进化生物学 进化生物学
- 结构生物学 结构生物学
背景情况:
- 了解蛋白质进化揭示了多功能性的机制.
- 多功能蛋白质对于复杂的生物来说至关重要.
- 蛋白质的灵活性是适应结构和功能的关键.
研究的目的:
- 审查灵活性和结构转换在蛋白质多功能性中的作用.
- 突出内在无序的蛋白质/区域 (IDPs/IDRs) 作为多功能性的关键驱动因素.
- 扩大多功能性的概念,超越单个蛋白质序列.
主要方法:
- 文献综述专注于蛋白质结构功能关系.
- 计算数据挖掘和高通量测试的分析.
- 探索推动蛋白质进化的分子和分子间机制.
主要成果:
- 蛋白质的多功能性源于固有的或适应的灵活性.
- 内在无序的蛋白质/区域 (IDPs/IDRs) 呈现出类似流体的动态,使得从无序到有序的转变成为可能.
- 折叠切换蛋白还表现出结构可塑性,用于各种功能.
- 多功能性代表了一个复杂的,多层次的多样化,与功能奇点分开.
结论:
- 蛋白质内在障碍是实现多功能性的主要机制.
- 灵活性和功能驱动的结构转变是进化的蛋白质能力的核心.
- 这项研究扩大了蛋白质多功能性的范围,强调了动态结构适应.
相关概念视频
Intrinsically Disordered Proteins
17.7K
Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
17.7K
Protein Complexes with Interchangeable Parts
2.5K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.5K
Protein Folding
117.7K
Overview
117.7K
Amyloid Fibrils
9.3K
Amyloid fibrils are aggregates of misfolded proteins. Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils.
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
9.3K
Allosteric Proteins-ATCase
5.7K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.7K
Ligand Binding and Linkage
4.8K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.8K


