相关水动力学在拥挤环境中的蛋白质稳定性和活性方面的作用
Tanmoy Khan1, Bisal Halder1, Nilimesh Das1
1Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, UP 208 016, India.
The journal of physical chemistry. B
|September 3, 2024
概括
大分子拥挤通过改变水的动态影响蛋白质的稳定性和活性. 刚性水可以使蛋白质稳定,但阻碍其活动,而柔性水可以使蛋白质不稳定,但增强其活动.
科学领域:
- 生物化学 生物化学
- 物理化学 物理化学
- 细胞生物学 细胞生物学
背景情况:
- 大分子拥挤模拟细胞环境,影响蛋白质的稳定性和活性.
- 目前对拥挤效应的理解缺乏详细的机制性见解,特别是关于水的动态.
研究的目的:
- 研究相关水动态在拥挤环境中的蛋白质稳定性和活性中的作用.
- 阐明水结构调制的机制性贡献,超出传统的排斥体积和体效应.
主要方法:
- 作为模型系统,使用了布罗梅林和Ficoll-70.
- 进行了系统的度依赖性研究和溶解动态的成分分析.
- 使用迈凯利斯-门模型分析了酶动力学,以确定Vmax和KM.
主要成果:
- 刚性相关水通过稳定蛋白质,但通过使它们不稳定;柔性水表现出相反的效果.
- 微粘度,而不是批量粘度,控制了酶基质复合体的形成.
- 灵活的水动力学有利于产品的形成,而刚性水则阻碍了产品的形成.
结论:
- 相关的水动态对于拥挤系统中的蛋白质稳定性和活性至关重要.
- 水结构调制提供了对拥挤效应的更深层次的机制理解.
- 研究结果提供了对复杂生物环境中的酶动力学和蛋白质行为的洞察.
相关概念视频
Protein Folding
117.7K
Overview
117.7K
Globular Proteins
7.3K
In organisms, proteins are the most abundant macromolecules. They act as the building blocks of life and play various crucial roles in the body. Proteins can be broadly classified into two distinct subtypes based on their shape and solubilities: globular proteins and fibrous proteins.
Globular proteins serve many important physiological functions, such as acting as enzymes, cellular messengers, and molecular transporters. These roles often require the proteins to be soluble in the aqueous...
Globular proteins serve many important physiological functions, such as acting as enzymes, cellular messengers, and molecular transporters. These roles often require the proteins to be soluble in the aqueous...
7.3K
Molecular Chaperones and Protein Folding
17.8K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
17.8K
Noncovalent Attractions in Biomolecules
49.5K
Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
49.5K
Protein Diffusion in the Membrane
4.3K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
4.3K
Cooperative Allosteric Transitions
7.9K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
7.9K


