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相关概念视频

Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

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The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
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Regulation of Expression Occurs at Multiple Steps02:24

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Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
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Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome.  Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
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Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
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Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
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Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
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相关实验视频

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LDB1建立了多增强器网络来调节基因表达.

Nicholas G Aboreden1,2, Jessica C Lam1,2, Viraat Y Goel3,4,5

  • 1Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

bioRxiv : the preprint server for biology
|September 4, 2024
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概括

该研究显示,LDB1直接驱动增强剂-促进剂循环,形成对基因激活至关重要的调节网络,独立于CTCF或凝聚机制.

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科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 染色体动力学 染色体动力学

背景情况:

  • 增强剂-促进剂配对机制在很大程度上仍然是未知的.
  • CTCF/凝聚素是连接监管要素的已知因素,但其他因素研究较少.

研究的目的:

  • 研究LDB1在建立增强剂-促进剂循环中的直接作用.
  • 确定 LDB1 中介循环与其他已知因素 (如 CTCF 和凝聚力) 的独立性.
  • 阐明LDB1在基因激活和调控网络组织中的作用.

主要方法:

  • 使用降解系统的急性降解实验.
  • 在LDB1驱动的染色质循环的工程.
  • 分析核架构动力学在线粒分裂到G1过渡期间.
  • 三C和区域捕捉微C技术.

主要成果:

  • LDB1直接和广泛地促进增强剂-促进剂循环,通常独立于CTCF,凝聚素或YY1.
  • 工程LDB1循环是凝聚素独立的,凝聚素不会在LDB1位点停滞.
  • LDB1-依赖的相互作用与TAD组织和基因激活在转移至G1的转移过程中发生的转移相关.
  • LDB1组织多增强器网络进行转录激活.

结论:

  • LDB1是增强器-促进器循环和监管网络互连性的关键驱动因素.
  • LDB1为基因激活建立了关键的调节联系,独立于正规循环挤出机器.
  • LDB1在组织复杂的转录性调节网络方面发挥着重要作用.