在核糖体出口道内新生的多链的行为单残留效应
Fátima Pardo-Avila1, Renuka Kudva2,3, Michael Levitt1
1Department of Structural Biology, Stanford University, Palo Alto, CA, USA.
bioRxiv : the preprint server for biology
|September 4, 2024
概括
新生多链 (NC) 中的大型和疏水性残留物可以将它们从核糖体出口道 (ET) 拉出来,释放转化停止. 特定的残留物,如阿斯巴拉金,可以稳定或破坏这种相互作用.
科学领域:
- 分子生物学分子生物学
- 生物化学 生物化学
- 结构生物学 结构生物学
背景情况:
- 新生的多链 (NCs) 通过出口道 (ET) 退出核糖体.
- 转化停止 (APs) 通过在ET内结合来阻断转化.
- 在调节翻译方面,NC和ET之间的相互作用至关重要.
研究的目的:
- 调查AP中的单个残留物如何影响NC-ET相互作用.
- 了解APs拖延和释放翻译的机制.
- 探索特定氨基酸性质在产生对NC的拉力方面的作用.
主要方法:
- 力量概况分析 (FPA) 用于测量停滞的NC的拉力.
- 分子动力学 (MD) 模拟以可视化和分析NC-ET相互作用.
- 系统地将残留物放置在AP的甘氨酸-氨酸重复段内.
主要成果:
- 位于转移中心 (PTC) 超过10个残留的大型和疏水性残留物会对NC产生显著的拉力.
- 来自PTC的12位的阿斯巴拉金残留物与核糖体蛋白LU22形成稳定相互作用,减少拉力.
- 在相同位置的lysine或leucine增加了拉力,这表明残留物与ET的特定相互作用.
结论:
- 各个NC残留物的化学和物理特性决定了它们与ET的相互作用强度.
- 特定的残留物放置可以调节对AP施加的力,从而影响转化停止释放.
- *曼海米亚 succiniproducens* SecM AP利用特定的 ET 相互作用来促进翻译的停滞.
相关概念视频
Termination of Translation
25.3K
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
25.3K
Cotranslational Protein Translocation
7.3K
Translocation of proteins across membranes is an ancient process that occurs even in bacteria and archaebacteria. In fact, the components of the translocation machinery are still conserved between prokaryotes and eukaryotes.
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
7.3K
Directing Proteins to the Rough Endoplasmic Reticulum
7.2K
The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
7.2K
Post-translational Translocation of Proteins to the RER
5.6K
A sizable fraction of proteins destined for ER are first synthesized in the cell cytosol and then transported across the ER membrane–a process called post-translational translocation. Similar to cotranslationally translocated proteins, these proteins also use the Sec translocon complex to enter the ER lumen.
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
5.6K
Improving Translational Accuracy
9.4K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
9.4K
Insertion of Single-pass Transmembrane Proteins in the RER
6.7K
Integral membrane proteins are proteins adhered to the lipid bilayer of a cell organelle or membrane. They can be of two types: transmembrane integral proteins that span the lipid bilayer and monotopic proteins that are attached to either side of the membrane but do not pass through it.
Integral transmembrane proteins possess transmembrane and extra membrane domains. The transmembrane domains are primarily made of 20-25 hydrophobic amino acids arranged in a helical secondary confirmation. These...
Integral transmembrane proteins possess transmembrane and extra membrane domains. The transmembrane domains are primarily made of 20-25 hydrophobic amino acids arranged in a helical secondary confirmation. These...
6.7K


