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相关概念视频

Nucleic Acid Structure01:25

Nucleic Acid Structure

6.1K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
6.1K
RNA Structure01:19

RNA Structure

4.7K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
4.7K
Nucleic Acids02:43

Nucleic Acids

44.0K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
44.0K
Nucleic acids02:43

Nucleic acids

160.8K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
160.8K
Conserved Binding Sites01:49

Conserved Binding Sites

4.2K
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
4.2K
RNA Stability01:53

RNA Stability

33.4K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
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相关实验视频

Updated: Jun 14, 2025

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

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在RNA结构中使用RNA表面拓学预测小分子结合核酸.

Jiaming Gao1, Haoquan Liu1, Chen Zhuo1

  • 1Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan 430079, China.

Journal of chemical information and modeling
|September 4, 2024
PubMed
概括
此摘要是机器生成的。

新的深度学习模型ZHmolReSTasite准确地预测RNA小分子结合点,即使在复杂的结构中也是如此. 这一进步有助于通过改进RNA抑制剂设计来帮助药物发现.

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An Assay for Quantifying Protein-RNA Binding in Bacteria
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Using In Vitro and In-cell SHAPE to Investigate Small Molecule Induced Pre-mRNA Structural Changes
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Using In Vitro and In-cell SHAPE to Investigate Small Molecule Induced Pre-mRNA Structural Changes

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相关实验视频

Last Updated: Jun 14, 2025

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

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An Assay for Quantifying Protein-RNA Binding in Bacteria
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An Assay for Quantifying Protein-RNA Binding in Bacteria

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Using In Vitro and In-cell SHAPE to Investigate Small Molecule Induced Pre-mRNA Structural Changes
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Using In Vitro and In-cell SHAPE to Investigate Small Molecule Induced Pre-mRNA Structural Changes

Published on: January 30, 2019

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科学领域:

  • 计算生物学是一种计算生物学.
  • 结构生物信息学 结构生物信息学
  • 药物发现 药物发现

背景情况:

  • RNA小分子相互作用对于药物发现和抑制剂设计至关重要.
  • 准确识别RNA结合核酸对于开发有效的治疗方法至关重要.
  • 现有的预测方法与含有连接的复杂RNA结构作斗争.

研究的目的:

  • 开发一种新的深度学习模型,用于预测RNA小分子结合核酸.
  • 为了解决处理复杂RNA结构的现有方法的局限性.
  • 提高RNA向药物设计的准确性和效率.

主要方法:

  • 开发了ZHmolReSTasite,这是一个深度学习模型,通过RNA表面拓学结合了空间相关性.
  • 用序列和三级结构信息来进行高层次表示学习,对核酸进行了表征.
  • 在简单和复杂RNA结构的基准数据集上评估模型性能.

主要成果:

  • 在简单的RNA结构上,ZHmolReSTasite实现了高精度 (72.9%在TE18,76.7%在RB9).
  • 在具有连接的具有挑战性的RNA结构上,精度超过现有方法11.6%.
  • 在各种RNA结构中表现出强度和卓越性能.

结论:

  • ZHmolReSTasite有效地预测RNA小分子结合核酸,包括复杂结构.
  • 该模型使用空间相关性和RNA表面地形学提供了显著的优势.
  • 这种工具可以加速RNA抑制剂的设计,并为药物发现提供宝贵的见解.