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相关概念视频

Synthetic Biology02:55

Synthetic Biology

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Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
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Combinatorial Gene Control02:33

Combinatorial Gene Control

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Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
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What is Genetic Engineering?

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Overview
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Genomics02:02

Genomics

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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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ATP and Macromolecule Synthesis

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Biological macromolecules are organic compounds, predominantly composed of carbon atoms. The carbon atoms are covalently bonded with hydrogen, oxygen, nitrogen, and other minor elements. There are four major biological macromolecule classes: carbohydrates, lipids, proteins, and nucleic acids.
Most macromolecules are composed of single subunits, or building blocks, called monomers. The monomers combine with each other using covalent bonds to form larger molecules known as polymers.
Conversion of...
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CRISPR01:59

CRISPR

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Genome editing technologies allow scientists to modify an organism’s DNA via the addition, removal, or rearrangement of genetic material at specific genomic locations. These types of techniques could potentially be used to cure genetic disorders such as hemophilia and sickle cell anemia. One popular and widely used DNA-editing research tool that could lead to safe and effective cures for genetic disorders is the CRISPR-Cas9 system. CRISPR-Cas9 stands for Clustered Regularly Interspaced...
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通过JAX启用计算合成生物学:一个展示窗口

Olivia Gallup1, Kirill Sechkar1, Sebastian Towers1

  • 1University of Oxford, Department of Engineering Science, OX1 3PJ Oxford, U.K.

ACS synthetic biology
|September 4, 2024
PubMed
概括

合成生物学中的数学建模得到了JAX库的增强,在GPU上实现更快,更可扩展的模拟. 这项工作将先进的计算工具民主化,用于更广泛的生物研究应用.

科学领域:

  • 计算生物学 计算生物学
  • 合成生物学 合成生物学
  • 人工智能的人工智能

背景情况:

  • 数学建模至关重要,但在合成生物学中未得到充分利用.
  • 现有的人工智能框架有助于对计算硬件的访问.
  • 在深度学习之外,JAX能够实现多样化的计算.

研究的目的:

  • 在计算生物学中展示JAX库的实用性.
  • 展示JAX在合成生物学和定向进化中的应用.
  • 促进JAX的更广泛采用,以实现更快,更可扩展的生物模拟.

主要方法:

  • 使用JAX库进行计算任务.
  • 开发了三个合成生物学示例项目,并指导了进化.
  • 附带的Jupyter笔记本是为了可复制性和学习.

主要成果:

  • 成功地将JAX应用于各种计算生物学问题.
  • 使用GPU实现了更快的运行时间和灵活的缩放.
  • 展示了GPU便携性和数学增强的轻松性,如自动区分.

结论:

关键词:
爵士乐 (JAX) 是一种音乐形式.这是一种计算式计算.机器学习是机器学习.建模 建模模型 建模模型模拟模拟是指一个模拟模拟.合成生物学 合成生物学

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  • 对于计算生物学研究来说,JAX提供了显著的优势.
  • 提供的教程使JAX用于可扩展模拟的使用变得民主化.
  • 在生物学中,JAX促进了更大规模的实验,并提高了代码的可用性.