一本关于质量评估和数据提交的全面指南,用于肠道病原体的基因组监测
Ruth E Timme1, Tina Pfefer2, C Hope Bias3
1Center for Food Safety & Applied Nutrition, U.S. Food & Drug Administration, College Park, MD, USA. ruth.timme@fda.hhs.gov.
Methods in molecular biology (Clifton, N.J.)
|September 5, 2024
概括
本指南详细介绍了收集和提交肠道病原体的基因组数据,以加强全球监测. 它涵盖了NCBI病原体检测等公共存储库的质量控制,数据验证,提交和策划.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
背景情况:
- 全球基因组监测对于追踪肠道病原体至关重要.
- 标准化数据提交促进了国际合作和公共卫生洞察力.
- 现有的协议可能不涵盖数据包组装和提交的所有方面.
研究的目的:
- 为收集和提交用于肠道病原体基因组监测的标准数据包提供全面的协议.
- 确保公共存储库中的数据质量,验证和可访问性.
- 支持GenomeTrakr网络和更广泛的研究社区.
主要方法:
- 对基因组序列数据的质量控制评估.
- 相关上下文数据的验证.
- 公共存储库 (如NCBI) 的数据提交程序.
- 数据策划和维护的协议.
- 使用NCBI病原体检测来访问和分析数据.
主要成果:
- 为提交基因组数据建立了一个标准化的工作流.
- 通过质量控制和验证步骤确保数据完整性.
- 促进公众对肠道病原体基因组数据的访问.
- 通过NCBI工具启用高级数据查询和分析.
结论:
- 标准化的基因组数据提交对于有效的肠道病原体全球监测至关重要.
- 概述的协议提高了数据质量,可访问性和公共卫生决策的实用性.
- NCBI病原体检测是访问和分析病原体基因组数据的宝贵平台.
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