来自不同大陆的大麦种子的核心微生物群的表征,用于原产地追踪和检疫病原体评估
Xin Zhou1, Fang Liu1, Chun-Chun Wang1
1State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.
Food microbiology
|September 7, 2024
概括
大麦种子的微生物显示出明显的地理模式,使机器学习能够准确地追踪起源. 这项研究还有助于识别生物控制剂和检测农业贸易中的隔离病原体.
科学领域:
- 微生物学 微生物学
- 农业科学 农业科学
- 生物信息学是一种生物信息学.
背景情况:
- 种子传播的微生物作为植物病原体的载体,通过国际贸易对农业构成风险.
- 通过种子引入病原体可能导致农业产量和质量损失显著.
研究的目的:
- 描述大麦种子的微生物群落.
- 开发用于追踪大麦种子地理来源的方法.
- 建立用于识别隔离病原体的协议.
主要方法:
- 大麦种子的微生物群的特征.
- 机器学习模型实现原产地追踪.
- 分析微生物同时出现和排除模式.
- 开发一个核心病原体数据库和检查程序.
主要成果:
- 定义了大麦种子的核心微生物群.
- 在大陆的大麦种子微生物群落中表现出显著的地理特异性.
- 使用机器学习模型,在追踪大麦种子来源方面取得了超过95%的准确性.
- 确定了候选生物控制剂和微生物接种剂.
- 在中国港口成功检测出四种真菌和三种细菌隔离物种.
结论:
- 大麦种子微生物群具有强烈的地理特异性,有助于追踪原产地.
- 机器学习模型可以准确地预测大麦种子的起源.
- 该研究提供了通过微生物洞察力为农业生物安全和作物改进提供实用工具.
相关概念视频
Microorganisms in Agriculture and Food industry
Microorganisms play a crucial role in agriculture and the food industry, contributing to soil fertility, crop protection, and food production. Their functions range from nitrogen fixation and biopesticide production to fermentation and food preservation, making them indispensable to sustainable farming and food safety.Role in AgricultureNitrogen-fixing bacteria, such as Rhizobium (symbiotic) and Azotobacter (free-living), convert atmospheric nitrogen into ammonia through biological nitrogen...
Microbial Classification System
Classification is the process of organizing organisms into hierarchically inclusive groups based on their phenotypic similarities or evolutionary relationships. A species comprises one or more strains, and closely related species are grouped into genera. Genera are further classified into families, families into orders, orders into classes, and so forth, up to the domain level, which is the broadest taxonomic rank derived from a combination of phenotypic and genotypic data.The nomenclature of...
Modern Molecular Taxonomy
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
Microbes in Beverage Production
Alcoholic beverages such as wine, beer, and spirits are the products of microbial fermentation processes that transform simple sugars into ethanol and a wide array of complex flavor compounds. These transformations rely on the metabolic activities of specific yeasts and bacteria, which are selected and controlled to yield the desired beverage characteristics.Wine Fermentation and MaturationWine production begins with the crushing of grapes to release juice and pulp, forming a must that is...
Microbes in the Production of Fermented Foods
Lactic acid bacteria (LAB) and molds are instrumental in fermenting plant-based foods to enhance preservation and ensure year-round availability. These microbial processes convert plant carbohydrates into organic acids and other metabolites that inhibit spoilage organisms and contribute to the sensory qualities of the final product.In sauerkraut production, cabbage goes through a microbial succession that starts with cocci such as Leuconostoc mesenteroides. These microbes begin fermentation by...
Development of Human Microbiota
The human microbiota begins developing at birth and undergoes continual change as we age. Infancy marks a critical period of microbial sensitivity, offering a “window of opportunity” during which beneficial microbes help mature the immune system. By age three, children typically develop a more stable and diverse microbial community. Newborns acquire microbes from their immediate environment; vaginal delivery favors maternal vaginal microbes, while cesarean births favor microbes from the skin...


