无处不在的海洋细菌的超高亲和力运输蛋白质
Ben E Clifton1, Uria Alcolombri2, Gen-Ichiro Uechi3
1Protein Engineering and Evolution Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Japan. benjamin.clifton@oist.jp.
Nature
|September 11, 2024
概括
在海洋中丰富的SAR11细菌使用高度特异和高亲和度的溶解物结合蛋白来捕获稀缺的营养物质. 这种适应性解释了它们在缺乏营养的水域的成功.
科学领域:
- 海洋微生物学
- 生物地质化学
- 分子生物学
背景情况:
- SAR11细菌是海洋中最丰富的微生物, 对于海洋的生态化学循环至关重要.
- 它们居住在具有竞争力的,营养有限的 (寡进的) 表面海洋环境中.
- 溶液结合蛋白对营养吸收至关重要,但在SAR11中仍未得到充分研究.
研究的目的:
- 在代表性的SAR11细菌中实验性地表征所有溶解物结合蛋白.
- 了解这些蛋白质在寡质适应中的功能和特性.
- 确定新的碳来源并使SAR11能力的生物地理分析成为可能.
主要方法:
- 对SAR11溶解物结合蛋白的全基因组实验性表征.
- 对基质结合的亲和性和特异性测量.
- 功能分析以确定营养吸收途径.
主要成果:
- SAR11溶解物结合蛋白具有异常高的结合亲和力 (> 20 pM 分离常数) 和特异性.
- 鉴定了SAR11细菌使用的新型碳来源.
- 提供了一个全面的基板吸收能力数据集.
结论:
- 高亲和度,特定的溶解物结合蛋白是SAR11适应寡度海洋的关键分子机制.
- 这项研究增强了对海洋生态系统中溶解有机物吸收的理解.
- 这些发现可以准确地绘制SAR11营养摄入的地图.
更多相关视频
09:12Selection of Transporter-Targeted Inhibitory Nanobodies by Solid-Supported-Membrane SSM-Based Electrophysiology
Published on: May 3, 2021
2.6K
10:43Expression, Detergent Solubilization, and Purification of a Membrane Transporter, the MexB Multidrug Resistance Protein
Published on: December 3, 2010
22.2K
相关概念视频
Carrier-Mediated Transport
313
Carrier-mediated transport is a pivotal process in drug absorption, particularly for lipid-insoluble drugs, and encompasses facilitated diffusion and active transport. Facilitated diffusion allows drugs to move along their concentration gradient without energy expenditure, while active transport utilizes ATP to drive drug movement against this gradient.
Active transport involves two types of membrane-spanning transporters: uptake and efflux. Uptake transporters are expressed in the small...
Active transport involves two types of membrane-spanning transporters: uptake and efflux. Uptake transporters are expressed in the small...
313
ABC Transporters: Exporter
4.2K
ATP-binding cassette or ABC transporter is the largest superfamily of integral membrane proteins. The transporters have transmembrane-binding domains (TMDs) and nucleotide-binding domains (NBDs). The TMDs are specific to their substrates, whereas the NBDs are similar to engines that complete ATP hydrolysis to complete the substrate transport. They can be full transporters consisting of two TMDs and NBDs, half transporters with one TMD and NBD, while some encoded with a single TMD or NBD are...
4.2K
ABC Transporters: Importer
2.7K
ATP-binding cassette or ABC transporters are a class of ATP-driven pumps that hydrolyze ATP to move solutes across the membrane. They can be grouped into importers and exporters. While exporters are present in all domains of life, importers exist only in bacteria and some plants.
In bacteria, based on the number of transmembrane helices and the chemical nature of their substrates, the ABC importers can be divided into three types:
In bacteria, based on the number of transmembrane helices and the chemical nature of their substrates, the ABC importers can be divided into three types:
2.7K
Membrane Transporters
10.5K
Transporters are essential membrane transport proteins with functions related to cell nutrition, homeostasis, communication, etc. Approximately 7% of all genes in the human genome code for transporters or transporter-related proteins.
Transporters are mainly composed of alpha-helices, built from bundles of ten or more helices traversing the plasma membrane. The solute-binding sites are located midway, where some of the helices are broken or distorted, making space for the binding site through...
Transporters are mainly composed of alpha-helices, built from bundles of ten or more helices traversing the plasma membrane. The solute-binding sites are located midway, where some of the helices are broken or distorted, making space for the binding site through...
10.5K
The Significance of Membrane Transport
24.2K
The transport of solutes across the cell membrane is essential for metabolic processes, like maintaining cell size and volume, generating the action potential, exchanging nutrients and gases, etc. Membrane transport can be either passive or active. It can be simple diffusion, facilitated, or mediated transport aided by transport proteins such as transporters and channels.
Transporters facilitate either an active or passive movement of solutes. They can allow a single-molecule transport down its...
Transporters facilitate either an active or passive movement of solutes. They can allow a single-molecule transport down its...
24.2K
Facilitated Diffusion
349
The plasma membrane, a critical structure in cellular biology, houses an array of transporters, or carrier proteins, interspersed within its lipid bilayer. These proteins play a crucial role in solute transport through facilitated diffusion, a form of passive diffusion that uses transporters to move the molecules across the membrane.
In this process, substrates such as organic compounds and ions interact with a transporter on one side, triggering conformational changes in proteins that enable...
In this process, substrates such as organic compounds and ions interact with a transporter on one side, triggering conformational changes in proteins that enable...
349
