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相关概念视频

Overview of Transposition and Recombination02:13

Overview of Transposition and Recombination

15.4K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.4K
DNA-only Transposons02:57

DNA-only Transposons

14.4K
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
14.4K
Ribosome Profiling02:24

Ribosome Profiling

3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.5K
Non-LTR Retrotransposons03:18

Non-LTR Retrotransposons

11.4K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.4K
Reporter Genes02:11

Reporter Genes

11.3K
Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
11.3K

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相关实验视频

Updated: Jun 13, 2025

Real-Time Quantification of the Effects of IS200/IS605 Family-Associated TnpB on Transposon Activity
04:04

Real-Time Quantification of the Effects of IS200/IS605 Family-Associated TnpB on Transposon Activity

Published on: January 20, 2023

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IRescue:在单个细胞水平上对可转换元素表达的不确定性意识量化.

Benedetto Polimeni1,2, Federica Marasca1, Valeria Ranzani1

  • 1INGM, Istituto Nazionale di Genetica Molecolare 'Romeo ed Enrica Invernizzi', Milan, Italy.

Nucleic acids research
|September 13, 2024
PubMed
概括

可转移元素 (TE) 是移动DNA序列. 一个新的工具,IRescue,量化了单细胞中TE亚家族的表达,揭示了它们在细胞多样性和疾病中的作用.

科学领域:

  • 基因组学就是基因组学.
  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 可转移元素 (TE) 是移动DNA序列,影响真核生物基因组进化.
  • TEs显示组织特异性转录,但它们在细胞多样性中的作用很难用单细胞RNA测序 (scRNA-seq) 来研究.
  • 挑战包括TE无处不在和遗传相似性,使表达分析复杂化.

研究的目的:

  • 介绍IRescue,一种用于量化可转换元素子家族表达在单细胞水平的新型软件.
  • 克服scRNA-seq在分析不同组织和条件的TE表达方面的局限性.
  • 将TE表达模式与细胞异质性和疾病状态联系起来.

主要方法:

  • 开发了一种单细胞RNA测序分析工具IRescue.
  • 实现了一个独特的 UMI 免复制算法来纠正序列错误.
  • 使用预期最大化程序来实现准确的多映射读数重新分配.

主要成果:

  • 使用模拟和真实scRNA-seq数据证明了IRescue的精度.
  • 在SARS-CoV-2感染期间分析了人类结直肠癌,大脑,皮肤衰老和PBMC的数据.
  • 将TE表达特征与特定的生物环境和疾病状况联系起来.

更多相关视频

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations
09:34

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations

Published on: October 25, 2018

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An Approach to Study Shape-Dependent Transcriptomics at a Single Cell Level
06:02

An Approach to Study Shape-Dependent Transcriptomics at a Single Cell Level

Published on: November 2, 2020

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相关实验视频

Last Updated: Jun 13, 2025

Real-Time Quantification of the Effects of IS200/IS605 Family-Associated TnpB on Transposon Activity
04:04

Real-Time Quantification of the Effects of IS200/IS605 Family-Associated TnpB on Transposon Activity

Published on: January 20, 2023

2.3K
A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations
09:34

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations

Published on: October 25, 2018

6.6K
An Approach to Study Shape-Dependent Transcriptomics at a Single Cell Level
06:02

An Approach to Study Shape-Dependent Transcriptomics at a Single Cell Level

Published on: November 2, 2020

5.7K

结论:

  • 在单个单元格中,IRescue准确量化了可转换元素表达.
  • TE表达模式提供了关于细胞异质性的见解.
  • TE特征与特定的生物背景和疾病进展相关,突出显示了它们的功能相关性.