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相关概念视频

CRISPR01:59

CRISPR

Genome editing technologies allow scientists to modify an organism’s DNA via the addition, removal, or rearrangement of genetic material at specific genomic locations. These types of techniques could potentially be used to cure genetic disorders such as hemophilia and sickle cell anemia. One popular and widely used DNA-editing research tool that could lead to safe and effective cures for genetic disorders is the CRISPR-Cas9 system. CRISPR-Cas9 stands for Clustered Regularly Interspaced Short...
CRISPR and crRNAs02:53

CRISPR and crRNAs

Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
Experimental RNAi02:15

Experimental RNAi

RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...

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相关实验视频

Updated: Jun 24, 2026

Using Sniper-Cas9 to Minimize Off-target Effects of CRISPR-Cas9 Without the Loss of On-target Activity Via Directed Evolution
11:37

Using Sniper-Cas9 to Minimize Off-target Effects of CRISPR-Cas9 Without the Loss of On-target Activity Via Directed Evolution

Published on: February 26, 2019

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学习量化CRISPR指导RNA的目标外活动的不确定性.

Furkan Özden1, Peter Minary1

  • 1Department of Computer Science, University of Oxford, Oxford OX1 3QD, UK.

Nucleic acids research
|September 14, 2024
PubMed
概括

克里斯普尔基因组编辑面临着具有目标外效应的挑战. crispAI预测了目标外活动的不确定性,并提供全基因组sgRNA效率得分,以更好地评估基因操纵中的风险.

科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.

背景情况:

  • 基于CRISPR的基因组编辑提供了精确的基因操纵,但受到非目标效应的限制.
  • 目前的预测方法专注于点估计,不完全捕捉风险.
  • 在临床应用中,非目标活性的不确定性至关重要.

研究的目的:

  • 开发一种新的方法来预测CRISPR非目标裂变活动的不确定性估计.
  • 为了引入crispAI聚合物,一个全基因组单向导RNA (sgRNA) 效率评分.
  • 为CRISPR应用提供更全面的风险评估.

主要方法:

  • 利用神经网络架构来预测不确定性.
  • 采用零膨胀负二项式 (ZINB) 模型来捕获非目标数据中的计数噪声.
  • 开发了用于全基因组 sgRNA 效率评分的 crispAI 聚合物.

主要成果:

  • crispAI提供了对非目标切割的校准不确定性估计.
  • 该方法表现出比现有方法更优越的预测性能.
  • crispAI-aggregate为sgRNA优先排序提供了更丰富的信息.

更多相关视频

CIRCLE-Seq for Interrogation of Off-Target Gene Editing
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CIRCLE-Seq for Interrogation of Off-Target Gene Editing

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Genome-Wide CRISPR Screen for Unveiling Radiosensitive and Radioresistant Genes
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Genome-Wide CRISPR Screen for Unveiling Radiosensitive and Radioresistant Genes

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相关实验视频

Last Updated: Jun 24, 2026

Using Sniper-Cas9 to Minimize Off-target Effects of CRISPR-Cas9 Without the Loss of On-target Activity Via Directed Evolution
11:37

Using Sniper-Cas9 to Minimize Off-target Effects of CRISPR-Cas9 Without the Loss of On-target Activity Via Directed Evolution

Published on: February 26, 2019

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CIRCLE-Seq for Interrogation of Off-Target Gene Editing
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CIRCLE-Seq for Interrogation of Off-Target Gene Editing

Published on: November 1, 2024

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Genome-Wide CRISPR Screen for Unveiling Radiosensitive and Radioresistant Genes
08:32

Genome-Wide CRISPR Screen for Unveiling Radiosensitive and Radioresistant Genes

Published on: May 23, 2025

83

结论:

  • crispAI通过量化预测不确定性来提高CRISPR基因组编辑中的风险评估.
  • 开发的工具有助于改进sgRNA设计中的决策.
  • 这项工作促进了CRISPR技术的安全性和适用性.