相关实验视频
Updated: Jun 21, 2026

00:09
Pooled CRISPR-Based Genetic Screens in Mammalian Cells
Published on: September 4, 2019
21.8K
在单细胞CRISPR屏幕中使用CLEANSER对环境gRNA进行表征和生物信息过
Siyan Liu1,2, Marisa C Hamilton3,2, Thomas Cowart1
1Computational Biology and Bioinformatics, Duke University, Durham, NC, USA.
bioRxiv : the preprint server for biology
|September 16, 2024
概括
单细胞RNA-seq CRISPR屏幕中的环境导向RNA (gRNA) 引起噪音. 我们开发了CLEANSER,这是一款精确识别和过这种噪音的模型,改进了基因表达分析.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
背景情况:
- 单细胞RNA测序 (scRNA-seq) 与CRISPR屏幕相结合,可以进行高通量基因组扰动分析.
- 来自其他细胞的环境导向RNA (gRNA) 引入噪音,导致scRNA-seq CRISPR屏幕中的错误正的gRNA分配.
研究的目的:
- 在单细胞CRISPR屏幕中描述环境gRNA噪声.
- 开发和验证用于过环境gRNA噪声的计算模型.
主要方法:
- 使用CRISPR场测试来量化环境gRNA污染.
- 开发了CLEANSER,一种混合模型,包括gRNA和细胞特异性正常化.
- 在实验数据集上训练有素的CLEANSER,以区分本地和环境gRNAs.
主要成果:
- 环境gRNA过显著影响差异性基因表达分析结果.
- 清洁器有效地识别和过环境gRNA噪声.
- 与替代方法相比,CLEANSER提高了gRNA细胞分配的准确性.
结论:
- 准确过环境gRNA噪声对于可靠的scRNA-seq CRISPR屏幕分析至关重要.
- 清洁器为减轻环境gRNA干扰提供了强大的解决方案.
- 通过CLEANSER改进的gRNA赋值准确性,有助于更精确的下游生物解释.
相关概念视频
CRISPR
Genome editing technologies allow scientists to modify an organism’s DNA via the addition, removal, or rearrangement of genetic material at specific genomic locations. These types of techniques could potentially be used to cure genetic disorders such as hemophilia and sickle cell anemia. One popular and widely used DNA-editing research tool that could lead to safe and effective cures for genetic disorders is the CRISPR-Cas9 system. CRISPR-Cas9 stands for Clustered Regularly Interspaced Short...
CRISPR and crRNAs
Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
CRISPR
Genome editing technologies allow scientists to modify an organism’s DNA via the addition, removal, or rearrangement of genetic material at specific genomic locations. These types of techniques could potentially be used to cure genetic disorders such as hemophilia and sickle cell anemia. One popular and widely used DNA-editing research tool that could lead to safe and effective cures for genetic disorders is the CRISPR-Cas9 system. CRISPR-Cas9 stands for Clustered Regularly Interspaced Short...
The Antiviral System of Bacteria and Archaea: CRISPR
CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats is a adaptive immune system found in bacteria and archaea that protects against viral infections. This system enables prokaryotic cells to identify, remember, and neutralize foreign genetic elements, primarily bacteriophages, by storing fragments of the invader’s DNA as a genetic memory.The CRISPR immune response begins during an initial infection. Cas (CRISPR-associated) proteins play a central role in this defense.
CRISPR/Cas9 Genome Editing
The CRISPR-Cas system serves as a bacterial defense mechanism against invading genetic elements such as viruses and plasmids, forming the foundation for its adaptation as a powerful genome-editing tool. Originally discovered in prokaryotes, this system has been repurposed to revolutionize genetic engineering across a wide range of organisms, including plants, animals, and humans. The core component, Cas9, is an endonuclease derived from Streptococcus pyogenes, capable of introducing...

