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相关概念视频

Histone Variants at the Centromere02:30

Histone Variants at the Centromere

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Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
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Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

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The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
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Histone Modification02:32

Histone Modification

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The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
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Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

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The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
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Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

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Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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相关实验视频

Updated: Jun 12, 2025

CRISPR-Mediated Reorganization of Chromatin Loop Structure
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CRISPR-Mediated Reorganization of Chromatin Loop Structure

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识别与染色质循环和基因组功能相关的遗传变异.

Sourya Bhattacharyya1, Ferhat Ay2,3

  • 1La Jolla Institute for Immunology, La Jolla, CA, USA. sourya@lji.org.

Nature communications
|September 17, 2024
PubMed
概括

我们通过分析HiChIP数据,确定了影响T细胞中染色质循环的新型遗传变异. 这些变异,称为相互作用QTLs (iQTLs),将基因型与基因表达和细胞连接性联系起来.

科学领域:

  • 基因组学就是基因组学.
  • 免疫学 免疫学 免疫学
  • 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.

背景情况:

  • 了解基因表达的遗传调节在免疫学中至关重要.
  • 染色体构成在调节基因活性的过程中起着关键作用.
  • 以前的研究集中在eQTLs和基因素QTLs上,但染色质接触在遗传变异中的作用较少被探索.

研究的目的:

  • 为了确定与原始CD4 T细胞中的染色质接触变异相关的遗传变异.
  • 探索染色体接触QTL (iQTL) 和基因表达QTL (eQTL) 之间的关系.
  • 定义新的QTLs,包括连接性QTLs,以及它们对细胞特异性基因表达的影响.

主要方法:

  • 从30名原始CD4T细胞 (nCD4) 的捐赠者产生了全面的HiChIP数据集.
  • 执行了QTL映射以识别与HiChIP接触者基因型依赖变异相关的iQTL.
  • 集成iQTL数据与现有的eQTL和基因素QTL数据集,以及GWAS变体.

主要成果:

  • 在nCD4细胞中确定了许多iQTLs,显示与已知的eQTLs和基因素QTLs存在大量重叠.
  • 发现了一组nCD4iQTLs的子集,该子集可以预测记忆CD4T细胞子集中的基因表达趋势.

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Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
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Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration

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相关实验视频

Last Updated: Jun 12, 2025

CRISPR-Mediated Reorganization of Chromatin Loop Structure
09:20

CRISPR-Mediated Reorganization of Chromatin Loop Structure

Published on: September 14, 2018

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Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
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Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration

Published on: January 9, 2020

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Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
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Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

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  • 定义的连接性-QTLs,将基因型依赖的染色质接触变化与广泛的基因组区域联系起来.
  • 结论:

    • 染色体接触为QTL映射提供了一个补充方式.
    • 基于HiChIP的iQTL分析对于发现新的QTL来说非常强大.
    • 这种方法将遗传变异与细胞特异性基因表达和调控网络连接联系起来.