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相关概念视频

RNA Structure01:23

RNA Structure

71.2K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
71.2K
RNA-seq03:21

RNA-seq

9.9K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.9K
Nucleic Acid Structure01:25

Nucleic Acid Structure

6.0K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
6.0K
RNA Stability01:53

RNA Stability

33.4K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.4K
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

29.4K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
29.4K
Nucleic acids02:43

Nucleic acids

160.5K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
160.5K

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相关实验视频

Updated: Jun 12, 2025

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

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使用RNA结构进行序列设计.

Mingyi Zhu1, David H Mathews2

  • 1Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, USA.

Methods in molecular biology (Clifton, N.J.)
|September 23, 2024
PubMed
概括
此摘要是机器生成的。

本研究介绍了用于创建特定RNA结构的RNA设计软件. 它解决了RNA序列设计的挑战,为结构化和非结构化RNA提供了工具.

关键词:
遗传算法 遗传算法 遗传算法反向折叠是一种反向折叠.非结构性设计的设计.设计RNA结构设计RNA结构设计

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RNA Secondary Structure Prediction Using High-throughput SHAPE
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RNA Secondary Structure Prediction Using High-throughput SHAPE

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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins

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相关实验视频

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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RNA Secondary Structure Prediction Using High-throughput SHAPE
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RNA Secondary Structure Prediction Using High-throughput SHAPE

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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins

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科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学

背景情况:

  • 已知的RNA在蛋白质表达中的作用已经扩大到包括通过非编码RNA的催化和基因调节.
  • 最近的研究强调了特定RNA结构在各种应用中的重要性.
  • RNA设计软件的开发正在推进,由RNA二次结构预测方法驱动.

研究的目的:

  • 为RNA序列设计软件提供协议.
  • 为了应对设计具有特定二次结构的RNA序列的挑战.
  • 为结构化和非结构化RNA设计引入工具.

主要方法:

  • 使用RNA结构包,特别是结构RNA的"设计"工具.
  • 使用"orega"工具进行非结构化RNA序列设计.
  • 专注于用于in silico RNA设计的协议.

主要成果:

  • 介绍了两个RNA设计软件工具的协议.
  • 促进了RNA序列的设计,满足了特定的二次结构要求.
  • 解决了与RNA二级结构设计相关的计算挑战.

结论:

  • RNA设计软件对于实验和治疗应用至关重要.
  • "设计"和"orega"工具为复杂的RNA序列设计提供了解决方案.
  • 克服NP-hard计算挑战是推动RNA设计的关键.