单细胞基因组和表观基因组共同分析揭示了乳腺癌中的硬线和可塑性
bioRxiv : the preprint server for biology
|September 24, 2024
概括
一种新的方法,wellDA-seq,同时测量单细胞中的整个基因组和染色质可访问性. 这揭示了乳腺癌进化过程中的遗传和表观遗传变化,识别了细胞起源和微环境相互作用.
科学领域:
- 基因组学就是基因组学.
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 癌症生物学 癌症生物学
背景情况:
- 了解乳腺癌的进展需要分析遗传和表观基因组的变化.
- 单模式测量限制了对遗传改变和表观基因组表型之间的相互作用的洞察力.
研究的目的:
- 开发一种高通量方法,同时对单细胞的全基因组和染色质可访问性进行分析.
- 研究乳腺癌进化过程中遗传变化和表观基因组表型之间的关系.
主要方法:
- 开发了DA-seq,一种新的高基因组分辨率,高通量单细胞测序方法.
- 分析了来自正常和乳腺瘤组织的22,123个单细胞.
- 将表观基因组表型映射到跨癌症亚克隆的遗传系.
主要成果:
- 确定了乳腺癌进展中遗传硬线和表观遗传可塑性的证据.
- 确定了雌激素受体阳性乳腺癌中祖先癌细胞的上皮细胞起源.
- 在瘤微环境中的正常组织和非上皮细胞中发现了具有复制数异常 (CNA) 的细胞类型.
结论:
- wellDA-seq能够直接映射表观基因表型到单细胞中的遗传系.
- 提供了对推动乳腺瘤演变的遗传和表观遗传因素的复杂相互作用的见解.
- 识别特定的细胞类型和起源,涉及到乳腺癌的发展和进展.
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