菌体:一种互动的网络平台,用于探索性分析和细菌菌体基因组的可视化
Jinxin Zhao1,2, Jiru Han3, Yu-Wei Lin1
1Infection Program and Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Australia.
GigaScience
|September 25, 2024
概括
抗菌素耐药性需要新的治疗方法. 菌体基因组探索器 (PhageGE) 简化了菌体 (菌体) 基因组分析,加速了对抗药性感染的菌体治疗的开发.
科学领域:
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
- 微生物学 微生物学
背景情况:
- 抗菌素耐药性 (AMR) 构成了全球健康的重大威胁.
- 菌体 (菌体) 正在成为治疗多抗药性感染的替代疗法.
- 对菌体基因组学的有限理解和复杂的生物信息工具阻碍了菌体治疗的临床应用.
研究的目的:
- 开发一个用户友好的应用程序,用于互动的菌体基因组分析.
- 为了简化细菌体的关键基因组分析.
- 为了促进菌体治疗的临床转化.
主要方法:
- 开发PhageGE,这是一个基于R Shiny.构建的图形界面应用程序.
- 整合现有的R包与用于菌体基因组分析的新功能.
- 实现交互式可视化和出版品质的图像出口功能.
主要成果:
- 基基因能够进行遗传学分析,生命周期预测和比较基因组注释.
- 该应用程序提供了植物遗传树的交互式可视化.
- 用户可以轻松导出高质量的图像用于研究和出版.
结论:
- 基因简化了复杂的菌体基因组数据分析.
- 该工具有可能加速菌体治疗的开发和临床采用.
- PhageGE可以在线访问,供公众使用.
更多相关视频
03:33Author Spotlight: An Adapted Optical Density-Based Microplate Assay for Characterizing Actinobacteriophage Infection
Published on: June 30, 2023
2.1K
12:04Interactome-Seq: A Protocol for Domainome Library Construction, Validation and Selection by Phage Display and Next Generation Sequencing
Published on: October 3, 2018
8.9K
相关概念视频
Lytic Cycle of Bacteriophages
70.5K
Bacteriophages, also known as phages, are specialized viruses that infect bacteria. A key characteristic of phages is their distinctive “head-tail” morphology. A phage begins the infection process (i.e., lytic cycle) by attaching to the outside of a bacterial cell. Attachment is accomplished via proteins in the phage tail that bind to specific receptor proteins on the outer surface of the bacterium. The tail injects the phage’s DNA genome into the bacterial cytoplasm. In the...
70.5K
Lysogenic Cycle of Bacteriophages
62.0K
In contrast to the lytic cycle, phages infecting bacteria via the lysogenic cycle do not immediately kill their host cell. Instead, they combine their genome with the host genome, allowing the bacteria to replicate the phage DNA along with the bacterial genome. The incorporated copy of the phage genome is called the prophage. Some prophages can re-activate and enter the lytic cycle. This often occurs in response to a perturbation, such as DNA damage, but can also transpire in the absence of...
62.0K
