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相关概念视频

Genome Size and the Evolution of New Genes03:21

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While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
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Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
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The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
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DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
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Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
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The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
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内基因逆转扩大了细菌的编码能力

Rachael B Chanin1, Patrick T West1, Jakob Wirbel1

  • 1Department of Medicine, Division of Hematology, Stanford University, Stanford, CA, USA.

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概括

细菌通过DNA反转产生多样性,这个过程被称为相变化. 研究人员在基因内发现了新的内基因逆转子,在不增加基因组大小的情况下扩大了细菌蛋白质的多样性.

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科学领域:

  • 微生物学
  • 基因组学
  • 生物信息学

背景情况:

  • 细菌群体表现出异质性,而不是严格的克隆性,这是由于相变化等机制.
  • 阶段变化,通常由DNA逆转介导,改变基因表达并影响细菌的健康和生存.
  • 基因逆转可以扭转促进体的方向,控制基因转录.

研究的目的:

  • 开发一种计算工具 (PhaVa),用于识别长读序列数据中的DNA反转.
  • 发现和描述一种位于基因内的新型DNA逆变,称为"内基因逆变子".

主要方法:

  • 开发用于检测DNA逆转的PhaVa计算工具.
  • 从细菌和古物分离的长读测序数据集的分析.
  • 在*Bacteroides thetaiotaomicron*中确定内基因逆转子的实验验证.

主要成果:

  • 在多种细菌和古生物基因组中识别了372种新型内基因逆转子.
  • 通过翻转内部DNA序列,证明内基因逆转子使基因能够编码多种蛋白质变异.
  • 实验验证了10个内基因逆转子,并对*thiC*基因中的一个进行了表征.

结论:

  • 内基因逆转子是一个重要的发现,扩大了细菌基因组的编码能力.
  • PhaVa是识别DNA反转的一个有价值的工具,有助于进一步研究细菌基因组动力学.
  • 这种机制为细菌提供了产生蛋白质多样性和适应环境变化的新策略.