开发基于机器学习的特定目标评分函数,用于基于结构的结合亲和力预测人类二基酸脱酶抑制剂的结合亲和力
Jinhui Meng1, Li Zhang1,2,3, Zhe He1
1School of Life Science, Liaoning University, Shenyang, Liaoning, China.
Journal of computational chemistry
|September 26, 2024
概括
研究人员开发了一种新的评分功能,TSSF-hDHODH,以识别人类二氨酸脱酶 (hDHODH) 的潜在抑制剂,这是自身免疫性疾病和癌症的目标. 这一功能超过了现有的方法,并确定了crizotinib作为一个有前途的候选人.
科学领域:
- 生物化学和酶学 生物化学和酶学
- 计算化学和药物发现
- 药品化学 药品化学 是一个
背景情况:
- 人类二基酸脱酶 (hDHODH) 对于新型胺合成至关重要.
- hDHODH是对自身免疫性疾病和癌症的验证治疗标.
- 现有的评分功能在准确预测hDHODH抑制剂疗效方面存在局限性.
研究的目的:
- 开发一种新型的,针对人类二甲酸脱酶的特定目标评分函数 (TSSF-hDHODH).
- 为了提高hDHODH抑制剂虚拟查的准确性.
- 为了确定hDHODH相关疾病的潜在候选药物.
主要方法:
- 使用了来自AutoDock Vina.的对接结构.
- 集成的酶-连接体相互作用和连接体特征.
- 使用支持向量回归来构建TSSF-hDHODH评分函数.
- 通过交叉验证和外部数据集验证得分函数.
- 在FDA批准的药物库和药典中进行虚拟选.
- 进行了分子动力学模拟,用于候选者验证.
主要成果:
- TSSF-hDHODH评分函数实现了高的皮尔森相关系数 (0.86在交叉验证,0.74在外部验证).
- TSSF-hDHODH显著超过了AutoDock Vina和RF-Score. 的表现.
- 虚拟查确定了crizotinib作为一种潜在的hDHODH抑制剂.
- 分子动力学模拟支持crizotinib的候选人进一步优化.
结论:
- 开发的TSSF-hDHODH评分功能是识别hDHODH抑制剂的强大工具.
- 这种方法促进了对自身免疫性疾病和癌症的药物发现.
- 该方法可以扩展到开发其他酶标的评分功能.
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