催化冗余和 conformational 塑性驱动的选择性和随性在定数灭乳酸的选择性和随性
Marina Corbella1,2, Joe Bravo3, Andrey O Demkiv2
1Departament de Química Inorgànica (Seeió de Química Orgànica) & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martíi Franquès 1, 08028 Barcelona, Spain.
JACS Au
|September 27, 2024
概括
金属β-乳糖酶类乳酶 (MLLs) 可以降解参与微生物定数感应的N-L-同类素乳 (AHLs). 这项研究揭示了MLLs表现出机械的杂乱性,通过多个途径对基质进行水解,这对于设计新型的定数灭酶至关重要.
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 微生物的沟通方式
背景情况:
- 金属β-乳糖酶类乳酶 (MLLs) 降解N-L-同类素乳 (AHLs),对于微生物的定数感应至关重要.
- 定量体感应有助于致病性和生物膜的形成,使得定量体火 (QQ) 酶对工业和生物医学应用具有价值.
- 了解MLL机制和基质特异性对于定制QQ酶至关重要.
研究的目的:
- 对MLL GcL进行详细的生化,计算和结构研究.
- 调查GcL的基质特异性和催化机制.
- 探索MLL中的机械性乱交及其对酶工程的影响.
主要方法:
- 生物化学测试以确定酶活性和基质范围.
- 计算建模用于分析酶结构和机制.
- 关于GcL和相关乳酸酶的结构研究.
主要成果:
- GcL表现出广泛的基质特异性,并通过至少两种不同的机制对基质进行水解.
- 首选的催化机制受到基质结构和活性部位残留物的影响.
- 机械性乱交是MLL,包括AiiA和AaL以及其他酶家族的共同特征.
结论:
- 许多MLL患者表现出显著的机械性乱交,这是整个家庭的共同特征.
- 这种混杂性为蛋白质工程提供了机会,使新型QQ酶和其他机械多功能酶的设计成为可能.
- 了解这些机制有助于在生物技术和医学领域有针对性的酶设计.
相关概念视频
Cooperative Allosteric Transitions
7.9K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
7.9K
Ligand Binding and Linkage
4.8K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.8K
Allosteric Proteins-ATCase
5.7K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.7K
Ligand Binding Sites
12.8K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.8K
Regioselective Formation of Enolates
2.6K
As depicted in the figure below, the unsymmetrical ketones can form two possible enolates: less substituted or more substituted enolates. Usually, the thermodynamic enolates are formed from the more substituted α-carbon atom, while the kinetic enolates are formed faster by deprotonation from the less substituted position. The thermodynamic enolates have lower energy, so they are more stable. But the energy required to form kinetic enolates is less.
2.6K
Protein Complexes with Interchangeable Parts
2.5K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.5K


