关于Pythium cedri Chen 4的基因组序列数据草案,这是柏树根腐烂的致病原体
Jin-Feng Peng1, Yusufjon Gafforov2,3, Jian Yu1
1College of Landscape Architecture, Jiangsu Vocational College of Agriculture and Forestry, Zhenjiang 212400, China.
Data in brief
|September 27, 2024
概括
这项研究介绍了Pythium cedri Chen 4的基因组序列,Pythium cedri Chen 4是导致Cedrus deodara根腐烂的病原体. 基因组数据将有助于理解Pyhium进化和宿主相互作用.
科学领域:
- 植物病理学 植物病理学
- 基因组学就是基因组学.
- 菌类学 菌类学是指菌类学.
背景情况:
- 皮蒂物种分布在全球,包括重要的植物和动物病原体.
- Pythium cedri Chen 4被确定为一种致病分离物,导致Cedrus deodara的根腐.
研究的目的:
- 为了呈现Pythium cedri菌株Chen 4的综合性全基因组序列.
- 丰富遗传资源,用于研究Pyhium进化和宿主相互作用.
主要方法:
- 使用Illumina NovaSeq和太平洋生物科学续集平台进行全基因组测序.
- 基因组组装和注释. 基因组组装和注释.
主要成果:
- 在Pythium cedri Chen 4基因组组装成150个contigs (41.25 Mb).
- 组装产生了N50的1,717,859bp和N90的431,829bp.
- 鉴定了14077个编码蛋白质的基因,其中包括364个假定效应因子.
结论:
- 生成的基因组序列为Pythium cedri提供了宝贵的遗传资源.
- 这些数据可以增强对Pyhium进化及其与宿主相互作用的理解.
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