Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

7.0K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
7.0K
Speciation Rates01:07

Speciation Rates

21.1K
Overview
21.1K
Atomic Nuclei: Types of Nuclear Relaxation01:28

Atomic Nuclei: Types of Nuclear Relaxation

268
Nuclear relaxation restores the equilibrium population imbalance and can occur via spin–lattice or spin–spin mechanisms, which are first-order exponential decay processes.
In spin–lattice or longitudinal relaxation, the excited spins exchange energy with the surrounding lattice as they return to the lower energy level. Among several mechanisms that contribute to spin–lattice relaxation, magnetic dipolar interactions are significant. Here, the excited nucleus transfers...
268
Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

32
Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
32
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

45
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
45
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

29.3K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
29.3K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

The Road so Far: Tracing the Molecular Evolution of Hexokinase Family in Metazoa.

Genome biology and evolution·2026
Same author

Timing and Pattern of Early Diversification in Drosophilidae (Diptera).

Molecular biology and evolution·2025
Same author

Challenges in Assembling the Dated Tree of Life.

Genome biology and evolution·2024
Same author

Predicting novel mosquito-associated viruses from metatranscriptomic dark matter.

NAR genomics and bioinformatics·2024
Same author

The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites.

Genome biology and evolution·2024
Same author

Genomic basis of neotropical primate adaptations.

Proceedings of the National Academy of Sciences of the United States of America·2022

相关实验视频

Updated: Jun 11, 2025

Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts
07:03

Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts

Published on: January 2, 2018

6.2K

建模替代率跨血统的进化和放松分子钟的模型.

Beatriz Mello1, Carlos G Schrago1

  • 1Department of Genetics, Federal University of Rio de Janeiro, Rio de Janeiro, RJ 21941-617, Brazil.

Genome biology and evolution
|September 27, 2024
PubMed
概括

放松分子时钟对于进化研究至关重要. 本综述涵盖了速率演变模型,它们对分歧时间的影响,并比较了贝叶斯式和非贝叶斯式方法.

科学领域:

  • 进化生物学是进化的生物学.
  • 计算生物学是一种计算生物学.
  • 人类遗传学 是一个学科.

背景情况:

  • 分子钟假设假设恒定的进化速率,这是经常违反.
  • 血统间的替代率变化显著影响差异时间估计.
  • 需要复杂的模型来解释类型的异质率.

研究的目的:

  • 审查分子时钟速率进化模型的发展.
  • 为了比较贝叶斯式和非贝叶斯式处理速率变化的方法.
  • 提供对该领域未来进步的见解.

主要方法:

  • 追踪速率演变模型的历史发展.
  • 讨论各种方法来建模速度进化.
  • 编制了可用于遗传学分析的可用软件的全面列表.

主要成果:

  • 速度进化模型已经从简单到复杂的贝叶斯式和非贝叶斯式方法取得了显著的进步.
  • 速率演变模型的选择可以影响差异时间估计和校准数据一样多.
  • 贝叶斯的方法提供了详细的分析,但可以是计算密集的,而非贝叶斯的方法更快.

结论:

关键词:
模型比较模型比较分子时钟的历史 分子时钟的历史分子约会分子约会利率异质性的异质性利率模型 利率模型 利率模型放松的分子时钟.

更多相关视频

Following the Dynamics of Structural Variants in Experimentally Evolved Populations
04:52

Following the Dynamics of Structural Variants in Experimentally Evolved Populations

Published on: February 3, 2023

923
High-resolution Imaging and Analysis of Individual Astral Microtubule Dynamics in Budding Yeast
10:23

High-resolution Imaging and Analysis of Individual Astral Microtubule Dynamics in Budding Yeast

Published on: April 20, 2017

9.5K

相关实验视频

Last Updated: Jun 11, 2025

Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts
07:03

Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts

Published on: January 2, 2018

6.2K
Following the Dynamics of Structural Variants in Experimentally Evolved Populations
04:52

Following the Dynamics of Structural Variants in Experimentally Evolved Populations

Published on: February 3, 2023

923
High-resolution Imaging and Analysis of Individual Astral Microtubule Dynamics in Budding Yeast
10:23

High-resolution Imaging and Analysis of Individual Astral Microtubule Dynamics in Budding Yeast

Published on: April 20, 2017

9.5K
  • 准确的速率进化的建模对于可靠的遗传学推断和分歧约会至关重要.
  • 了解不同建模方法 (贝叶斯式与非贝叶斯式) 之间的权衡是实际应用的关键.
  • 未来的研究应该专注于开发有效的方法来处理速率变化,特别是随着基因组学中"大数据"的增加.