药物向相互作用预测与协作对比学习和自适应的自步抽样策略
Zhen Tian1,2, Yue Yu1,2, Fengming Ni3
1School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou, 450001, Henan, China.
BMC biology
|September 28, 2024
概括
这项研究介绍了CCL-ASPS,这是一种用于药物向相互作用 (DTI) 预测的新深度学习模型. 它通过使用多个生物网络和更智能的负样本选择来提高DTI预测的准确性.
科学领域:
- 生物信息学是一种生物信息学.
- 计算化学计算化学
- 药物发现 药物发现 药物发现
背景情况:
- 药物向相互作用 (DTI) 的预测对于在药物发现和重新定位过程中识别潜在的候选药物至关重要.
- 现有的方法往往无法充分利用跨多个生物网络的互补关系,阻碍了一致的表示学习.
- 负样本的选择对DTI预测中的对比学习的表现产生了重大影响.
研究的目的:
- 提出一种新的深度学习模型,CCL-ASPS,用于增强药物向相互作用预测.
- 整合协作对比学习 (CCL) 和自适应自律抽样 (ASPS) 以提高表示一致性和负样本选择.
- 通过利用多网络信息和动态采样来解决以前的DTI预测方法的局限性.
主要方法:
- 开发了CCL-ASPS,这是一个结合协作对比学习 (CCL) 和自适应自律采样 (ASPS) 的深度学习模型.
- 通过利用多个生物网络来实现一致的表示,CCL可以学习药物和目标的融合嵌入式.
- ASPS动态选择有信息的负样本对来优化对比学习.
主要成果:
- 与已建立的数据集上的最先进方法相比,CCL-ASPS在药物向相互作用预测准确度方面取得了显著的改进.
- 废弃实验验证了协作对比学习和自适应自律采样策略的有效性和贡献.
- 该模型在预测性能方面取得了显著的改进,证实了其有效性.
结论:
- 拟议的CCL-ASPS模型通过整合CCL和ASPS,有效地克服了先前DTI预测方法的局限性.
- CCL-ASPS显著提高了DTI的预测性能,与现有技术相比,它提供了更强大的方法.
- 案例研究和冷启动实验凸显了CCL-ASPS在预测新药向相互作用方面的能力,有助于未来的药物发现工作.
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