转录因子的进化轨迹和代谢工程目标的选择
Yun Sun Lee1, Edward L Braun2, Erich Grotewold1
1Department of Biochemistry and Molecular Biology, Michigan State University , East Lansing, MI 48824, USA.
概括
为植物代谢工程选择转录因子 (TF) 是一个挑战. 进化轨迹,而不仅仅是序列同质性,更好地指导对代谢途径有效的TF的选择.
科学领域:
- 植物科学 植物科学
- 代谢工程是代谢工程.
- 进化生物学是进化的生物学.
背景情况:
- 转录因子 (TFs) 调节植物代谢途径中的多个基因.
- 为代谢工程选择最佳的TF往往是困难的.
- 遗传学关系是常用的,但可能会误导.
研究的目的:
- 评估基因关系与进化轨迹在植物代谢工程中选择转录因子的实用性.
- 举例说明进化史在哪些方面有助于TF选择,哪些方面有误导性.
主要方法:
- 在植物代谢途径中对TF进化和功能的比较分析.
- 案例研究说明了基于进化标准的成功和失败的TF选择.
主要成果:
- 进化关系可以促进用于代谢工程的TF选择.
- 在某些情况下,家族遗传关系是TF选择的糟糕指标.
- 进化轨迹提供了一个比单独的蛋白质序列同类学更可靠的指南.
结论:
- 转录因子的进化轨迹是植物代谢工程中选择目标的优越指标.
- 仅仅依赖蛋白质序列同质性可以导致次优TF选择.
- 了解TF的进化历史对于推进代谢工程策略至关重要.
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