个体之间的不同重组景观是由多态可转换元素驱动的
Yuheng Huang1, Yi Gao1, Kayla Ly1
1Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, USA.
bioRxiv : the preprint server for biology
|September 30, 2024
概括
可转移元素 (TE) 通过抑制介质重组来积极塑造基因组进化. 多态TE减少交叉 (CO) 事件,导致物种内部和物种之间不同的重组地图.
科学领域:
- 遗传学 遗传学 是一个
- 进化生物学 进化生物学
- 基因组学就是基因组学.
背景情况:
- 介质重组对于基因组进化至关重要,但影响其景观的因素仍然不清楚.
- 可转移元素 (TE) 经常被发现具有较低的重组率,但它们的因果作用仍在争论中.
研究的目的:
- 研究多态可转移元素 (TEs) 对介质重组率的直接影响.
- 为了确定TE是否是改变重组频率的原因或后果.
主要方法:
- 开发了一种使用PacBio长读测序的新方法,用于在聚合的重组个体中识别交叉 (CO).
- 将这种方法应用于具有不同TE插入配置文件的Drosophila菌株.
- 采用了正交的方法,包括重组杂交线和同源菌株.
主要成果:
- 多态TE,特别是基于RNA和表观遗传标记的TE,显著降低了CO的发生.
- 在带有插入和没有插入的同类序列之间,TEs会产生不同的重组频率.
- 这种TE介导的抑制有助于个体之间不同的重组地图.
结论:
- 移动基因组积极修改重组景观,挑战了将TEs视为仅仅是选择的结果的观点.
- 转基因是通过改变介质重组模式来塑造基因组进化的一种动态力量.
- 了解TE-TE和TE-宿主相互作用是解读基因组进化的关键.
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