VMAP:怀孕期间的阴道微生物群图谱
Antonio Parraga-Leo1,2,3,4,5, Tomiko T Oskotsky1,2,3, Boris Oskotsky1,2
1Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA 94143, United States.
JAMIA open
|September 30, 2024
概括
怀孕期间的阴道微生物组图集 (VMAP) 提供了来自3,800多个样本的阴道微生物组数据的交互可视化. 这种资源有助于研究人员了解怀孕及其结果.
科学领域:
- 微生物组研究的研究.
- 生殖健康 生殖健康
- 数据可视化数据可视化
背景情况:
- 阴道微生物组在怀孕结果中起着至关重要的作用.
- 了解它的动态对于母亲和婴儿健康至关重要.
- 之前的研究产生了碎片化的数据,限制了全面的分析.
研究的目的:
- 为怀孕期间的阴道微生物组创建一个交互式可视化工具.
- 为了促进新见解和假设生成的发现.
- 来自多项研究的数据汇总和标准化.
主要方法:
- 使用R shiny开发了怀孕期间的阴道微生物群图谱 (VMAP).
- 来自11项研究的综合数据,包括来自1402名孕妇的3880个样本.
- 使用开源工具MaLiAmPi进行数据聚合.
主要成果:
- VMAP可视化多样性测量,瓦伦西亚社区状态类型和微生物组成 (类型,分类学).
- 数据可以根据各种类别进行过,以便进行详细分析.
- 代表了怀孕期间阴道微生物组数据的最大和最多样化的地理聚合之一.
结论:
- VMAP 作为一个用户友好的资源,用于分析阴道微生物组数据.
- 它增强了对怀孕和相关结果的理解.
- 该工具可供研究人员和非R用户在线访问.
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