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基于NMR的细胞中央能量代谢和汇率的分析
1Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands. s.kostidis@lumc.nl.
Methods in molecular biology (Clifton, N.J.)
|October 1, 2024
概括
本研究介绍了一种核磁共振 (NMR) 光谱工作流程,用于哺乳动物细胞培养物的定量代谢分析. 该方法确保了机械洞察力和流量分析的高质量数据,与其他欧米克技术兼容.
科学领域:
- 代谢学 代谢学 代谢学
- 细胞的新陈代谢
- 分析化学 分析化学
背景情况:
- 细胞培养对于研究代谢过程至关重要.
- 准确的代谢物量化对于机械学见解至关重要.
- 核磁共振 (NMR) 光谱是代谢学的一个关键分析平台.
研究的目的:
- 使用NMR光谱学从附着哺乳动物细胞获得定量代谢数据的详细工作流程.
- 确保NMR工作流程与其他分析技术 (如基于LC或GCMS的脂管学和非向代谢学) 的兼容性.
- 为了证明细胞外核磁共振数据对于提取汇率流动率的实用性.
主要方法:
- 为附着哺乳动物细胞培养物开发和验证标准化NMR光谱学协议.
- 采样,数据采集和数据处理步骤的整合,用于定量代谢学.
- 工作流程的应用,用于分析细胞内和细胞外代谢物.
主要成果:
- 一个强大的工作流程,通过NMR光谱学从哺乳动物细胞培养物中获得定量代谢数据.
- 证明了与补充的OMICS方法的兼容性,使单个样本的多OMICS分析成为可能.
- 从NMR数据中成功地提取了细胞外交换流速.
结论:
- 提出的NMR工作流提供了一种可靠的方法,用于细胞培养物的定量代谢概况.
- 该协议有助于更深入地了解细胞代谢的机制,并支持流量分析研究.
- 该工作流对于代谢工程应用特别有价值,包括涉及人类诱导的多能干细胞的应用.
相关概念视频
Nuclear Magnetic Resonance (NMR): Overview
Nuclear magnetic resonance (NMR) is a phenomenon exhibited by certain nuclei that can absorb characteristic radio frequency radiation under certain conditions. NMR has been extensively applied in molecular spectroscopy and medical diagnostic imaging. In both these applications, the molecule or subject under study is placed in a magnetic field and irradiated with radio frequency energy.
NMR spectroscopy generates a spectrum where the characteristic absorption frequencies of the sample are...
NMR spectroscopy generates a spectrum where the characteristic absorption frequencies of the sample are...
Two-Dimensional (2D) NMR: Overview
The 1D NMR spectrum of large and complex molecules like natural products has complicated splitting patterns and overlapping signals, which can be easily interpreted using 2-dimensional (2D) NMR. Unlike 1D NMR, 2D NMR has two frequency axes that provide the coupling information between the nucleus A and nucleus B in a molecule. The process from which 2D spectra are obtained has four steps.
The first step is the preparation period, during which nucleus A is excited with a radiofrequency pulse.
The first step is the preparation period, during which nucleus A is excited with a radiofrequency pulse.
Atomic Nuclei: Magnetic Resonance
The number of nuclear spins aligned in the lower energy state is slightly greater than those in the higher energy state. In the presence of an external magnetic field, as the spins precess at the Larmor frequency, the excess population results in a net magnetization oriented along the z axis. When a pulse or a short burst of radio waves at the Larmor frequency is applied along the x axis, the coupling of frequencies causes resonance and flips the nuclear spins of the excess population from the...
NMR Spectrometers: Radiofrequency Pulses and Pulse Sequences
A pulse is a short burst of radio waves distributed over a range of frequencies that simultaneously excites all the nuclei in the sample. Upon passing a radio frequency pulse along the x-axis, the nuclei absorb energy corresponding to their Larmor frequencies and achieve resonance. This shifts the net magnetization vector from the z-axis toward the transverse plane. This angle of rotation of the magnetization vector, or the flip angle, is proportional to the duration and intensity of the pulse.
Applications Of NMR In Biology
Nuclear magnetic resonance (NMR) spectroscopy is a very valuable analytical technique for researchers. It has been used for more than 50 years as an analytical tool. F. Bloch and E. Purcell formulated NMR in 1946 and won the 1952 Nobel Prize in Physics for their work. Biological macromolecules such as proteins, nucleic acids, lipids, and organic molecules including pharmaceutical compounds, can be studied using this versatile tool that exploits the magnetic properties of certain nuclei.
The...
The...
Other Nuclides: 31P, 19F, 15N NMR
Many organic, inorganic, and biological molecules contain spin-half nuclei such as nitrogen-15, fluorine-19, and phosphorus-31. As a result, NMR studies of these nuclei have found extensive applications in chemical and biological research.
While fluorine-19 and phosphorous-31 have high natural abundances (100%) and positive gyromagnetic ratios, nitrogen-15 has a low natural abundance and a negative gyromagnetic ratio. However, nitrogen-15 is still preferred over nitrogen-14 (which has a high...
While fluorine-19 and phosphorous-31 have high natural abundances (100%) and positive gyromagnetic ratios, nitrogen-15 has a low natural abundance and a negative gyromagnetic ratio. However, nitrogen-15 is still preferred over nitrogen-14 (which has a high...

