MeSH2Matrix:结合MeSH关键字和机器学习,基于PubMed进行生物医学关系分类
Houcemeddine Turki1, Bonaventure F P Dossou2,3, Chris Chinenye Emezue2,4
1Data Engineering and Semantics Research Unit, Faculty of Sciences of Sfax, University of Sfax, Sfax, Tunisia. turkiabdelwaheb@hotmail.fr.
Journal of biomedical semantics
|October 1, 2024
概括
这项研究引入了MeSH2Matrix,一个新的数据集和生物医学关系分类方法. 它通过使用医学科目标题 (MeSH) 资格符来增强机器学习模型,提高分析科学文献的准确性和可靠性.
科学领域:
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
- 医疗信息学 医疗信息学
背景情况:
- 先进的机器学习改进了从学术文本中对生物医学关系的分类.
- 依赖原始文本限制了当前方法的概括性,精度和可靠性.
- 文献元数据为提高这一任务的性能提供了潜力.
研究的目的:
- 引入一种用于生物医学关系分类的方法,使用同时出现的医学主题标题 (MeSH) 的合格符.
- 介绍MeSH2Matrix,这是一个来自PubMed的46,469个生物医学关系的新型数据集.
- 评估MeSH资格器在改进分类模型方面的有效性.
主要方法:
- 开发了MeSH2Matrix数据集,映射了MeSH合格符协会和维基数据关系类型.
- 从PubMed出版物中策划了46,469个生物医学关系.
- 在MeSH2Matrix数据集上训练和评估了三种机器学习模型 (SVM,D-Model,C-Net).
主要成果:
- 最好的模型在195个关系类中达到70.78%的准确率,在5个超级类中达到83.09%.
- 特征分析检查了MeSH资格符号和分类生物医学关系之间的关系.
- 混矩阵提供了对模型性能的详细见解.
结论:
- 使用MeSH合格器为增强生物医学关系分类提供了一个有希望的途径.
- MeSH2Matrix数据集和方法可以导致更准确的生物医学本体学分类.
- 公共可访问的数据集和代码有助于可复制性和进一步研究.
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