对185只北美纯种马的全基因组序列的分析,跨越5代
Ernie Bailey1, Carrie J Finno2, Jonah N Cullen3
1University of Kentucky, Maxwell H. Gluck Equine Research Center, Lexington, KY, 40546, USA.
Scientific reports
|October 2, 2024
概括
纯血统马的全基因组测序揭示了显著的遗传多样性,但也表明通过广泛的遗传措施无法可靠地预测近亲繁殖水平. 建议对特定的遗传变异进行监测,以跟踪种群变化.
科学领域:
- 马类基因组学 马类基因组学
- 人口遗传学 人口遗传学
- 动物繁殖 动物繁殖
背景情况:
- 北美纯血犬表现出遗传多样性.
- 了解遗传多样性对于有效的育种计划至关重要.
研究的目的:
- 为了分析纯种马的全基因组序列 (WGS).
- 量化遗传变异,线粒型多样性和同卵性性 (ROH) 的自体运行.
- 为了比较老年和年轻马群之间的遗传多样性.
主要方法:
- 185匹纯血统马 (1965-2020) 的全基因组测序.
- 分析自体变异,线粒体DNA (线粒体类型) 和同胞性 (ROH) 的运行.
- 模拟SNP数组以评估其在估计ROH时的准确性.
主要成果:
- 已发现超过1430万种自体变体.
- 纯血动物属于17个已知的线粒型群中的9个.
- 较年长的马 (第一组) 比较年轻的马 (第二组) 呈现出更高的异构性和更多的变异.
- 基于WGS的近亲繁殖估计与SNP阵列估计的相关性比与血统数据更好.
- 个体内生育系数平均为0.266 (第一组) 和0.283 (第二组).
结论:
- 广泛的遗传多样性措施不足以区分马群.
- 监测特定的遗传变异更有效地跟踪纯血统种群变化.
- 公共可用的WGS数据可以作为未来人口遗传研究的基础.
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