PAIP1与前mRNA结合,并调节癌症通路基因的替代拼接,包括VEGFA
Jianfeng Zheng1,2, Xiaoyu Zhang3, Yaqiang Xue4,5
1Department of Laboratory Medicine, Baoan Central Hospital of Shenzhen, Shenzhen, 518102, Guangdong, P.R. China.
BMC genomics
|October 4, 2024
概括
聚 (A) 结合蛋白相互作用蛋白1 (PAIP1) 调节替代拼接,影响癌症的特征. 这项研究揭示了PAIP1的存在.
科学领域:
- 分子生物学分子生物学
- 在RNA生物学,RNA生物学.
- 癌症研究 癌症研究
背景情况:
- 聚 (A) 结合蛋白相互作用蛋白1 (PAIP1) 与癌症的发展和进展有关.
- 在瘤细胞中PAIP1的精确调节机制尚未完全理解.
研究的目的:
- 调查PAIP1.1的直接和间接RNA结合部位.
- 阐明PAIP1在调节替代拼接中的作用及其对癌症相关途径的影响.
主要方法:
- 紫外线交叉链接和RNA免疫沉降,然后进行测序 (iRIP-seq) 以映射PAIP1-RNA相互作用.
- RNA测序 (RNA-seq) 用于分析PAIP1调制的替代拼接.
- 蛋白质组分析以确定PAIP1相互作用的蛋白质.
主要成果:
- PAIP1与3'UTRs,mRNA前/mRNAs结合,更喜欢编码区域和内基,富含GA丰富的基因.
- PAIP1选择性地调节参与细胞迁移,mTOR和HIF-1信号通路的基因的替代拼接.
- PAIP1结合与替代拼接事件直接相关,影响拼接位点选择,正如VEGFA mRNA调节所示.
结论:
- PAIP1的功能既是多基解和替代拼接调节器.
- PAIP1在RNA处理中发挥着重要作用,特别是通过其对替代拼接的影响.
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