对T-even类型细菌的结构和功能洞察力T-even类型细菌的二氧化酶II
Yuhui Xin1,2, Runqi Xian1,2, Yunge Yang1,2
1National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Nature communications
|October 8, 2024
概括
我们确定了T4和T6菌体IIA型DNA拓酶的冷EM结构,揭示了它们的机制. 这些发现增强了对病毒DNA拓调节和潜在抑制剂开发的理解.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 病毒学 病毒学
背景情况:
- T-even细菌体是生物过程的重要模型生物体.
- IIA型DNA拓酶在菌体复制过程中调节DNA拓.
- 病毒拓酶II,特别是T4菌体中,尚不清楚.
研究的目的:
- 为了确定T4和T6菌体IIA型DNA拓酶的冷电子显微镜 (cryo-EM) 结构.
- 阐明菌体拓酶II的功能和演变机制.
- 探索菌体拓酶II作为抑制剂开发模型的潜力.
主要方法:
- 使用冷电子显微镜 (cryo-EM) 来确定高分辨率结构.
- 解决了阿波和DNA结合状态的全长结构.
- 分析了符合状态以了解酶机制.
主要成果:
- 获得了T4和T6菌体拓酶II的全长新型冷EM结构.
- 在T6菌体拓聚酶II中观察到不对称的二次相互作用.
- 获得了对异步ATP使用和DNA裂变机制的洞察力.
结论:
- 确定的结构为菌体IIA型DNA多聚合酶提供了一种机械蓝图.
- 了解菌体拓酶II增强了对同类生物的进化并行的知识.
- 菌体拓酶II是新型治疗抑制剂的潜在目标.
相关概念视频
DNA Topoisomerases
31.0K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
31.0K
Viral Replication: Lytic Cycle
7
Bacteriophages, or phages, are viruses that specifically infect bacteria. Among them, T-even bacteriophages, such as T4, exhibit a well-characterized lytic replication cycle in Escherichia coli (E. coli). This process ensures the rapid proliferation of the virus while ultimately leading to the destruction of the bacterial host.Attachment and DNA InjectionThe infection process begins with the recognition and binding of the T4 phage to the E. coli cell surface. Tail fibers of the phage...
7
Lytic Cycle of Bacteriophages
70.4K
Bacteriophages, also known as phages, are specialized viruses that infect bacteria. A key characteristic of phages is their distinctive “head-tail” morphology. A phage begins the infection process (i.e., lytic cycle) by attaching to the outside of a bacterial cell. Attachment is accomplished via proteins in the phage tail that bind to specific receptor proteins on the outer surface of the bacterium. The tail injects the phage’s DNA genome into the bacterial cytoplasm. In the...
70.4K
Viral Replication: Lysogenic Cycle
1
The lysogenic cycle is a crucial viral replication strategy that allows bacteriophages to persist within host cells without immediately destroying them. This process is primarily observed in temperate phages, such as bacteriophage lambda (λ), which infects Escherichia coli. The cycle allows the viral genome to persist across bacterial generations while keeping host cells viable.Integration of the Viral GenomeUpon infection, bacteriophage lambda attaches to the bacterial surface and injects...
1
DNA Helicases
21.2K
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
21.2K
Lysogenic Cycle of Bacteriophages
61.9K
In contrast to the lytic cycle, phages infecting bacteria via the lysogenic cycle do not immediately kill their host cell. Instead, they combine their genome with the host genome, allowing the bacteria to replicate the phage DNA along with the bacterial genome. The incorporated copy of the phage genome is called the prophage. Some prophages can re-activate and enter the lytic cycle. This often occurs in response to a perturbation, such as DNA damage, but can also transpire in the absence of...
61.9K


