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相关概念视频

RNA Structure01:23

RNA Structure

71.1K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
71.1K
Nucleic Acid Structure01:25

Nucleic Acid Structure

6.0K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
6.0K
RNA-seq03:21

RNA-seq

9.8K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.8K
Ribosome Profiling02:24

Ribosome Profiling

3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.5K

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相关实验视频

Updated: Jun 11, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
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RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

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SEISMICgraph:一种基于网络的RNA结构数据可视化工具.

Federico Fuchs Wightman1, Grant Yang1, Yves J Martin des Taillades2

  • 1Department of Microbiology, Harvard School of Medicine, Boston, Massachusetts, 02115, United States.

bioRxiv : the preprint server for biology
|October 10, 2024
PubMed
概括
此摘要是机器生成的。

SEISMICgraph是RNA结构研究的新网络工具,可视化化学探测数据,揭示RNA修饰如何影响结构和功能. 这个工具有助于理解基因调节和RNA结合.

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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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相关实验视频

Last Updated: Jun 11, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

31.4K
Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 结构生物学 结构生物学

背景情况:

  • RNA在基因调节中发挥着至关重要的作用,超出其遗传信息载体功能.
  • 化学探测技术已经进步,改善了RNA二次结构的识别和分析.
  • 高分辨率和高通量RNA结构分析对于理解生物机制越来越重要.

研究的目的:

  • 介绍SEISMICgraph,一种基于网络的RNA结构研究工具.
  • 为化学探测数据提供数据可视化和分析.
  • 为了促进RNA结构数据跨序列和条件的比较.

主要方法:

  • 开发一个用户友好的,基于Web的平台 (SEISMIC图).
  • 集成各种化学探测模式的数据可视化和分析.
  • 该工具的应用用于研究核糖突变和RNA修饰.

主要成果:

  • SEISMICgraph可以同时比较RNA结构数据.
  • 该工具可视化了依赖于腺因的结构变化和伪尿化的影响.
  • 在调查已知和假定的核糖突变中证明了实用性.

结论:

  • SEISMICgraph为RNA结构和修饰提供了新的见解.
  • 该工具为RNA结构研究提供了一个用户友好的界面,不需要编程专业知识.
  • 建立了RNA结构生物学未来应用的路线图.