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相关概念视频

Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

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Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
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Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

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The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
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Comparing Copy Number Variations and SNPs02:26

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Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
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Sanger Sequencing

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DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
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Genome Annotation and Assembly03:36

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The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
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Multi-species Conserved Sequences02:51

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Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
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Updated: Jun 10, 2025

A Nonsequencing Approach for the Rapid Detection of RNA Editing
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A Nonsequencing Approach for the Rapid Detection of RNA Editing

Published on: April 21, 2022

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通过ED字符串进行pangenome比较.

Esteban Gabory1, Moses Njagi Mwaniki2, Nadia Pisanti2

  • 1Centrum Wiskunde & Informatica, Amsterdam, Netherlands.

Frontiers in bioinformatics
|October 11, 2024
PubMed
概括
此摘要是机器生成的。

我们介绍了弹性退化 (ED) 字符串的匹配统计,以比较 pangenomes. 这种使用交叉图的方法提供了一种高效有效的方法来分析基因组序列集合.

关键词:
这就是SARS-CoV-2病毒.弹性衰变的弦弦.交点图形的图形是交点的匹配统计数据的统计.pangenome 的比较

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A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes
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A Deep-sequencing-assisted, Spontaneous Suppressor Screen in the Fission Yeast Schizosaccharomyces pombe
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科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 基因组学就是基因组学.

背景情况:

  • 弹性退化 (ED) 字符串提供了与变化或序列图相比,对泛列组的简化表示.
  • 泛基因组分析需要强大的方法来比较基因组序列的集合.

研究的目的:

  • 定义和计算ED字符串的相似性和距离尺度,作为泛基组比较工具.
  • 为了证明这些新措施的计算效率和实际有效性.

主要方法:

  • 定义了两个ED字符串的匹配统计数据作为相似度.
  • 使用ED字符串的交叉图来有效计算这些措施.
  • 实现了方法作为一个软件工具,用于泛基因组比较.

主要成果:

  • 交叉图法用于计算相似性/距离尺度,比经典的产品自动化构建速度快十倍.
  • 匹配的统计数据成功地使用现实数据重现了已知的SARS-CoV-2类别分类.
  • 实施的软件工具在合成和真实数据集上都表现出了效率和有效性.

结论:

  • 基于交叉图的匹配统计提供了一种高效和有效的方法来进行泛基因组比较.
  • 这种方法适用于分析基因组变异和分类,如SARS-CoV-2数据所示.