宿主内部的进化导致在SARS-CoV-2长期感染期间,上下呼吸道产生不同的血统
Majdouline El Moussaoui1, Sebastien Bontems2, Cecile Meex2
1Department of Infectious Diseases and General Internal Medicine, University Hospital of Liège, 1 Avenue de l'Hôpital, Liège 4000, Belgium.
Virus evolution
|October 14, 2024
概括
在免疫功能低下的患者中,持续的SARS-CoV-2感染可以推动显著的病毒进化. 这项研究揭示了不同样本类型中独特的Omicron BF.7亚系遗传多样性,突出了全面采样的必要性.
科学领域:
- 病毒学 病毒学
- 免疫学 免疫学 免疫学
- 遗传学 遗传学 是一个
背景情况:
- 免疫功能低下个体的持续严重急性呼吸综合征冠状病毒2 (SARS-CoV-2) 感染是新型病毒系的已知来源.
- 长期感染患者的宿主内病毒进化已被研究,但主要使用鼻样本.
研究的目的:
- 在免疫抑制患者长期感染SARS-CoV-2期间调查Omicron BF.7亚系的宿主内进化和遗传多样性.
- 评估鼻样本是否充分代表慢性感染宿主内病毒多样性的全谱.
主要方法:
- 来自六个时间点的八个样本的测序,超过1年的持续感染.
- 分析肠内单核酸变异的分析,indels,和删除.
- 病毒基因型在鼻,内吸血和支气管支气管洗样本中的比较.
主要成果:
- 在Omicron BF.7亚系中识别了87种内宿单核酸变异,2种内宿和362bp删除.
- 在鼻和下呼吸道样本中观察到不同的病毒基因型.
- 在宿主中证明了Omicron BF.7亚系的进一步分歧.
结论:
- 在长期感染期间,Omicron BF.7亚系可以经历显著的遗传多样化.
- 鼻取样可能低估了真正的宿主内病毒多样性.
- 慢性感染的患者可以在不同的解剖部位中藏着基因上不同的病毒种群,从而提供了对病毒进化动态的见解.
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