通过交叉拟合加速对基于R2的高维介质的介质效应的间隔估计
Zhichao Xu1, Chunlin Li2, Sunyi Chi1
1Department of Biostatistics, The University of Texas MD Anderson Cancer Center, 7007 Bertner Avenue, Houston, TX 77030, United States.
Biostatistics (Oxford, England)
|October 16, 2024
概括
这项研究引入了利用基因表达数据进行中介分析的高效R平方测量方法. 这种新方法提高了计算速度,同时在高维的奥米学研究中准确估计了调解效应.
科学领域:
- 基因组学就是基因组学.
- 生物统计学 生物统计学
- 系统生物学 系统生物学
背景情况:
- 调解分析研究了分子现象型,如基因表达,如何将暴露与健康结果联系起来.
- 由于效果取消,传统的基于平均值的调度措施可能与高维的奥米克数据不准确.
- 对于R平方调度措施的非参数引导方法是计算密集的.
研究的目的:
- 开发一个计算效率高的双阶段,交叉拟合的估计程序,用于R平方总调解效应的测量.
- 为高维分子数据提供更可靠的调解分析.
- 为了能够准确地估计R平方调解效应的置信区间.
主要方法:
- 为R平方调度量制定了一种两阶段的交叉拟合估计程序.
- 代确定独立性查 (iSIS) 用于部分样本来识别相关的调解者.
- 常规最小平方回归和封闭形式的非对称分布用于差异和置信区间估计.
主要成果:
- 与重新采样方法相比,拟议的程序显著提高了计算效率.
- 该方法保持了与启动方法相比较的覆盖概率.
- 申请Framingham心脏研究验证了基因表达调解血压的发现,并确定了胆固醇水平中的基因作用.
结论:
- 新的估计程序提供了一个计算效率高,准确的方法,用于R平方调解分析在高维的奥米克设置.
- 这种方法提高了对健康结果背后的分子机制的理解.
- 该程序可以在R包CFR2M中找到.
相关概念视频
Friedman Two-way Analysis of Variance by Ranks
154
Friedman's Two-Way Analysis of Variance by Ranks is a nonparametric test designed to identify differences across multiple test attempts when traditional assumptions of normality and equal variances do not apply. Unlike conventional ANOVA, which requires normally distributed data with equal variances, Friedman's test is ideal for ordinal or non-normally distributed data, making it particularly useful for analyzing dependent samples, such as matched subjects over time or repeated measures...
154
Expected Frequencies in Goodness-of-Fit Tests
2.5K
A goodness-of-fit test is conducted to determine whether the observed frequency values are statistically similar to the frequencies expected for the dataset. Suppose the expected frequencies for a dataset are equal such as when predicting the frequency of any number appearing when casting a die. In that case, the expected frequency is the ratio of the total number of observations (n) to the number of categories (k).
2.5K
One-Way ANOVA: Equal Sample Sizes
3.2K
One-Way ANOVA can be performed on three or more samples with equal or unequal sample sizes. When one-way ANOVA is performed on two datasets with samples of equal sizes, it can be easily observed that the computed F statistic is highly sensitive to the sample mean.
Different sample means can result in different values for the variance estimate: variance between samples. This is because the variance between samples is calculated as the product of the sample size and the variance between the...
Different sample means can result in different values for the variance estimate: variance between samples. This is because the variance between samples is calculated as the product of the sample size and the variance between the...
3.2K
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation
403
This lesson introduces two critical methods in pharmacokinetics, the Wagner-Nelson and Loo-Riegelman methods, used for estimating the absorption rate constant (ka) for drugs administered via non-intravenous routes. The Wagner-Nelson method relates ka to the plasma concentration derived from the slope of a semilog percent unabsorbed time plot. However, it is limited to drugs with one-compartment kinetics and can be impacted by factors like gastrointestinal motility or enzymatic degradation.
On...
On...
403
One-Way ANOVA: Unequal Sample Sizes
5.7K
One-way ANOVA can be performed on three or more samples of unequal sizes. However, calculations get complicated when sample sizes are not always the same. So, while performing ANOVA with unequal samples size, the following equation is used:
5.7K
Multiple Regression
2.9K
Multiple regression assesses a linear relationship between one response or dependent variable and two or more independent variables. It has many practical applications.
Farmers can use multiple regression to determine the crop yield based on more than one factor, such as water availability, fertilizer, soil properties, etc. Here, the crop yield is the response or dependent variable as it depends on the other independent variables. The analysis requires the construction of a scatter plot...
Farmers can use multiple regression to determine the crop yield based on more than one factor, such as water availability, fertilizer, soil properties, etc. Here, the crop yield is the response or dependent variable as it depends on the other independent variables. The analysis requires the construction of a scatter plot...
2.9K


