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相关概念视频

RNA-seq03:21

RNA-seq

9.8K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.8K
Ribosome Profiling02:24

Ribosome Profiling

3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
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Next-generation Sequencing03:00

Next-generation Sequencing

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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
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Real Time RT-PCR02:57

Real Time RT-PCR

56.9K
Real-time reverse transcription-polymerase chain reaction, or Real-time RT-PCR, is an analytical tool used to determine the expression level of target genes. The method involves converting mRNA to complementary DNA with the help of an enzyme known as reverse transcriptase, followed by the PCR amplification of the cDNA. These two processes can be performed simultaneously in a single tube or separately as a two-step reaction.
The real-time quantification of the number of amplified products is...
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相关实验视频

Updated: Jun 9, 2025

Author Spotlight: Cost-Effective Transcriptomic Drug Screening - Unlocking New Targets
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Author Spotlight: Cost-Effective Transcriptomic Drug Screening - Unlocking New Targets

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实时和可编程的转录组测序与PROFIT-seq.

Jinyang Zhang1, Lingling Hou1, Lianjun Ma2

  • 1Institute of Zoology, Chinese Academy of Sciences, Beijing, China.

Nature cell biology
|October 24, 2024
PubMed
概括
此摘要是机器生成的。

介绍PROFIT-seq,这是一种用于转录组测序的新方法,可以丰富目标RNA,同时保持整个转录组量化. 这种进步提高了数据产量,并加快了特定病原体或突变的检测.

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Sequencing of mRNA from Whole Blood using Nanopore Sequencing
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High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions

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科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.

背景情况:

  • 细胞的转录组复杂性阻碍了特定的转录检测.
  • 现有的向RNA测序方法需要复杂的丰富,可能会损害综合分析.

研究的目的:

  • 引入可编程的全长异形转录组测序 (PROFIT-seq),用于有针对性的转录丰富和整个转录组量化.
  • 为了克服RNA测序当前方法的局限性.

主要方法:

  • 利-seq使用组合逆转录来捕获各种RNA类型 (多氨基酸,非多氨基酸,圆形).
  • 一个可编程的控制系统在测序过程中选择性地丰富了目标转录.
  • 该方法确保了对整个转录组的公正量化.

主要成果:

  • 利-seq将有效数据产量提高了3倍以上.
  • 它可以将检测特定病原体或突变的时间缩短75%.
  • 在结直肠聚发育中的应用揭示了宿主免疫反应和细菌感染的相互作用.

结论:

  • PROFIT-seq提供了目标转录的准确和高效的测序,同时保持了全球转录组量化.
  • 该方法在临床诊断和向丰富方面具有广泛的应用.