流感A型病毒在宿主体内的进化和在三个季节的密集样本家庭队列中的积极选择
Emily E Bendall1, Yuwei Zhu2, William J Fitzsimmons3
1Department of Microbiology & Immunology, University of Michigan, Ann Arbor, MI 48109, United States.
Virus evolution
|October 24, 2024
概括
个体内的A型流感病毒 (IAV) 进化表现出较低的多样性,主要是由遗传漂移和净化选择驱动的. 阳性选择是罕见的,并且不一致地检测到,在季节,亚型和年龄组之间存在微妙的差异.
科学领域:
- 病毒学 病毒学
- 进化生物学 进化生物学
- 基因组学就是基因组学.
背景情况:
- 已知A型流感病毒 (IAV) 抗原漂移,但在急性感染中很难检测到阳性选择.
- 挑战包括将罕见突变与测序错误区分开来,以及缺乏正式选择试验.
研究的目的:
- 通过序列抽样来研究IAV在宿主内部的演变.
- 识别积极选择的特征及其在急性感染中的频率.
主要方法:
- 在3个季节内,从143个个体的346个每日鼻子拭子中对IAV群体的测序.
- 在0.5%的频率值下识别肠内单核酸变异 (iSNVs).
- 应用赖特-费舍尔近似贝叶斯计算模型来检测正选择.
主要成果:
- 主体内IAV种群的多样性较低;>75%的突变频率低于2%.
- 儿童在宿主内部的进化率略高于青少年和成年人.
- 在A(H3N2) 的9%位点和A(H1N1) pdm09的11%位点检测到正选择,但这些位点很少循环.
结论:
- 宿主内部的IAV进化是由遗传漂移和净化选择主导的.
- 阳性选择很少见,在急性流感A病毒感染中不一致检测到.
- 跨季节,亚型和年龄组观察到进化中的微妙差异.
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