RNA拼接接口景观揭示了人类癌症中丰富的瘤特异性转录
Qin Li1, Ziteng Li2, Bing Chen3
1Department of Integrative Oncology, Fudan University Shanghai Cancer Center, and Shanghai Key Laboratory of Medical Epigenetics, Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China; Department of Pathology, Fudan University Shanghai Cancer Center, and Institute of Pathology, Fudan University, Shanghai 200032, China.
Cell reports
|October 24, 2024
概括
研究人员发现了许多与癌症进展和不良结果相关的瘤特异性转录 (TST). 这些新型RNA拼接变体可能为癌症诊断和免疫治疗提供新的点.
科学领域:
- 分子生物学分子生物学
- 基因组学就是基因组学.
- 癌症研究 癌症研究
背景情况:
- RNA拼接对于基因表达和转录多样性至关重要.
- 对RNA拼接接口的详细分析是有限的.
- 了解转录变异是推动癌症研究的关键.
研究的目的:
- 在各种样本类型中全面分析RNA剪接接口.
- 识别和描述瘤特异性转录 (TST).
- 研究TST在癌症中的临床和功能影响.
主要方法:
- 从34,775个样本中进行大规模RNA测序数据分析.
- 识别和注释RNA拼接连接点.
- 对TST,瘤干,患者结果和体突变之间的相关性分析.
主要成果:
- 在泛癌分析中确定了29051个新的瘤特异性转录 (TST).
- TST与瘤干度正相关,并表明患者的不良结果.
- 转基因突变与体质突变相互排斥,并富含致癌转移元素.
- TSTs可以产生新抗原,并且可以在血液细胞外囊泡中检测到.
结论:
- 由TSTs表示的新型RNA拼接模式在癌症中发挥着重要作用.
- TSTs代表了癌症诊断和预后的有希望的生物标志物.
- TST为新型癌症免疫疗法提供了潜在的目标.
相关概念视频
RNA Splicing
56.1K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.1K
Alternative RNA Splicing
21.0K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.0K
lncRNA - Long Non-coding RNAs
8.5K
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
8.5K
Pre-mRNA Processing: RNA Splicing
5.2K
5.2K
Cancer-Critical Genes II: Tumor Suppressor Genes
7.3K
Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
7.3K
Chromatin Structure and RNA Splicing
2.7K
2.7K


