与野生型菌株相比,SARS-CoV-2变种诱导炎症基因表达增加,但干扰素反应和血红蛋白合成减少
Mariam Merchant1, Javaria Ashraf1, Kiran Iqbal Masood1
1Department of Pathology and Laboratory Medicine, Aga Khan University, Karachi, Pakistan.
Scientific reports
|October 29, 2024
概括
这项研究揭示了SARS-CoV-2令人担忧的变体 (VOC) 引发炎症加剧和减少宿主血合成. 较不严重的COVID-19病例显示I型干扰素增加,表明对不同变异的免疫反应不同.
科学领域:
- 病毒学 病毒学
- 免疫学 免疫学 免疫学
- 基因组学就是基因组学.
背景情况:
- 引起关注的SARS-CoV-2变种 (VOC) 呈现出增加的传播和严重程度.
- 了解变种特异性病原体对于公共卫生至关重要.
研究的目的:
- 使用宿主血液转录组概况研究SARS-CoV-2变种的致病机制.
- 为了比较跨野生型,α,delta和Omicron感染的转录签名,包括无症状病例.
主要方法:
- 对感染不同SARS-CoV-2菌株的COVID-19患者宿主血液转录组的分析.
- 症状和无症状病例之间以及各种病毒菌株之间差异表达基因 (DEGs) 的比较.
主要成果:
- 与野生类型相比,VOC感染显示炎症,亡和凝血途径增加.
- 阿尔法和德尔塔变种抑制了先天性免疫通路,而德尔塔和奥米克朗则上调了核糖体通路.
- 在VOC感染中,EGR1和CXCL8被上调;血合成基因和干扰素刺激基因 (ISG) 被下调.
- 无症状的三角洲病毒感染显示了细胞因子和ISG的增加.
结论:
- 挥发性有机化合物感染与炎症增加和宿主血合成减少有关.
- 截然不同的转录特征与病毒菌株和疾病严重程度相关.
- 在不太严重的COVID-19病例中,I型干扰素水平更高,这表明潜在的保护作用.
相关概念视频
Single Nucleotide Polymorphisms-SNPs
14.1K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
14.1K
Rous Sarcoma Virus (RSV) and Cancer
5.0K
Rous Sarcoma virus or RSV was discovered by F. Peyton Rous in the year 1911 as a filterable transmissible agent that could cause tumors in chickens. He won a Nobel Prize for this discovery in 1966. His experiments clearly demonstrated that some cancers could be caused by infectious agents and led to the discovery of many more cancer-causing viruses in animals as well as humans.
RSV is a retrovirus that contains two copies of a plus-strand RNA genome. Its genome consists of four main open...
RSV is a retrovirus that contains two copies of a plus-strand RNA genome. Its genome consists of four main open...
5.0K
Leaky Scanning
5.1K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.1K
RNA Splicing
56.1K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.1K
Viral Mutations
32.2K
A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material...
32.2K
siRNA - Small Interfering RNAs
16.6K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
16.6K


