VDGE:对多种物种的基因编辑动物的变异数据库的数据库
Wenwen Shi1, Enhui Jin2,3,4, Lu Fang5
1State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, No. 1 West Beichen Road, Chaoyang District, Beijing 100101, China.
Nucleic acids research
|October 29, 2024
概括
一个新的数据库,基因编辑动物变异数据库 (VDGE),系统地收集基因编辑动物的基因组变异. 该资源有助于理解意外后果,并促进生物学和医学研究.
科学领域:
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
- 动物模型 动物模型
背景情况:
- 基因编辑技术迅速发展,导致基因编辑动物的数量增加,用于研究.
- 基因编辑动物的非目标突变可能会导致意外的基因组变异和功能后果.
- 现有的数据库不足以系统地收集和分析这些变化.
研究的目的:
- 建立第一个对基因编辑动物的基因组变异的开放存储库.
- 为变化提供全面的注释,以促进功能后果评估.
- 支持基因编辑动物研究的数据挖掘和深入分析.
主要方法:
- 基因编辑动物变异数据库 (VDGE) 的开发.
- 基因编辑和野生动物三组的基因组变异的统一和标准化分析.
- 包括目标突变和非目标变异的包括,并进行全面的注释.
主要成果:
- 从210个样本中,VDGE包含了151个目标突变.
- VDGE包含115,710个从107个基因编辑和野生类型动物三组中识别出的变异.
- 对于每个变体,提供了全面的注释细节.
结论:
- VDGE是第一个系统地收集和对基因编辑动物的基因组变异进行对比的存储库.
- 该数据库有助于对功能后果的评估,并促进机理学研究.
- VDGE支持基因编辑动物的实际应用,特别是像子这样的大物种.
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