综合知识图和药物分子图融合通过对抗性网络进行药物相互作用预测
Yu Li1, Zhu-Hong You1, Yang Yuan2
1School of Computer Science, Northwestern Polytechnical University, Xi'an710129, China.
Journal of chemical information and modeling
|October 30, 2024
概括
这项研究引入了一个新的框架,使用生成对抗网络来预测药物相互作用 (DDI),提高计算药理学和药物发现的准确性和可靠性.
科学领域:
- 计算药理学是一种计算药理学.
- 生物信息学是一种生物信息学.
- 药物发现 药物发现
背景情况:
- 同时服用药物可以提高治疗疗效,但会增加不良药物相互作用 (DDI) 的风险.
- 现有的DDI预测方法很难有效地将生物医学信息与药物特性集成到知识图中.
研究的目的:
- 开发一个新的端到端框架来预测药物相互作用 (DDI).
- 通过有效地整合分子结构和知识图信息来提高DDI预测的准确性和稳定性.
主要方法:
- 利用传递信息的神经网络来获取分子结构信息.
- 雇佣了一个知识意识图表注意力网络,用于知识图表药物表示.
- 实施双生成对抗网络,用于对抗训练,以捕捉分子和语义信息之间的相互关系.
主要成果:
- 在二进制分类任务中超越了最先进的算法,显示了准确度,AUC,AUPR和F1得分的改进.
- 在多类分类指标方面取得了显著的改进,包括精度,宏精度,宏回忆和宏F1.
- 废弃性研究证实了该方法在DDI预测中的有效性和稳定性.
结论:
- 提出的基于生成对抗网络的框架有效地整合了各种各样的药物信息,以准确地预测DDI.
- 这种方法提供了一个强大的解决方案,用于识别潜在的药物相互作用,推进计算药理学和患者安全.
相关概念视频
Agonism and Antagonism: Quantification
331
When drugs are administered, they can elicit either an agonist or antagonist effect on the body. Agonism occurs when a drug activates a specific receptor, triggering a biological response. On the other hand, antagonism happens when a drug binds to the same receptors but blocks their activation, thereby preventing a biological response.
To quantify these effects, researchers use a dose-response curve, which provides valuable information about the potency and efficacy of a drug. Potency refers to...
To quantify these effects, researchers use a dose-response curve, which provides valuable information about the potency and efficacy of a drug. Potency refers to...
331
Drug-Receptor Interaction: Antagonist
2.8K
An antagonist is a drug that binds strongly to a receptor without activating it. An antagonist prevents other molecules, such as neurotransmitters or hormones, from binding to the receptor and triggering a cellular response. Such interaction effectively hinders the normal physiological processes mediated by the receptor, resulting in various pharmacological effects depending on the specific receptor targeted.
Antagonists can be classified as competitive or noncompetitive based on their...
Antagonists can be classified as competitive or noncompetitive based on their...
2.8K
Combined Effects of Drugs: Antagonism
8.3K
The combined effects of drugs can result in various interactions, of which an important type is antagonism. Antagonism is a mechanism where one drug inhibits or counteracts the effects of another drug. Antagonism can occur through various means, including receptor binding, allosteric modulation, functional interaction, chemical reactions, and pharmacokinetic processes.
The most common type is receptor antagonism, where one drug acts as an antagonist to block the effects of another drug by...
The most common type is receptor antagonism, where one drug acts as an antagonist to block the effects of another drug by...
8.3K
Drug-Receptor Interaction: Agonist
2.4K
Agonists are drugs that interact with specific receptors in the body to produce a biological response. When an agonist binds to a receptor, it activates or enhances the receptor's function, leading to physiological effects. The interaction between agonist drugs and receptors is crucial for their therapeutic action in various medical treatments.
Agonists can bind to receptors in different ways. Some agonists bind directly to the receptor's active site, mimicking the endogenous...
Agonists can bind to receptors in different ways. Some agonists bind directly to the receptor's active site, mimicking the endogenous...
2.4K
Protein-protein Interfaces
12.5K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.5K
Combined Effects of Drugs: Synergism
3.7K
Synergism is a useful mechanism where combining two or more drugs is more effective than each constituent used alone. Such combinations are also called supra-additive interactions. The drugs collectively enhance the final therapeutic effect by acting on different targets. Another advantage is that the low dose of each constituent drug is sufficient to achieve the desired effect. This helps reduce the duration of therapy and lower the adverse effects of these drugs.
Such synergistic combinations...
Such synergistic combinations...
3.7K


