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相关概念视频

Maxam-Gilbert Sequencing01:05

Maxam-Gilbert Sequencing

11.1K
In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
The...
11.1K
Sanger Sequencing01:57

Sanger Sequencing

753.0K
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
753.0K
Fixing Double-strand Breaks02:04

Fixing Double-strand Breaks

12.3K
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
12.3K
Next-generation Sequencing03:00

Next-generation Sequencing

87.6K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
87.6K
Long-patch Base Excision Repair01:02

Long-patch Base Excision Repair

7.0K
Since the discovery of the two BER pathways, there has been a debate about how a cell chooses one pathway over the other and the factors determining this selection. Numerous in vitro experiments have pointed out multiple determinants for the sub-pathway selection. These are:
7.0K
RNA-seq03:21

RNA-seq

9.8K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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相关实验视频

Updated: Jun 8, 2025

CIRCLE-Seq for Interrogation of Off-Target Gene Editing
08:23

CIRCLE-Seq for Interrogation of Off-Target Gene Editing

Published on: November 1, 2024

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SEGUID v2:扩展SEGUID对循环,线性,单链和双链生物序列的检查和值.

Humberto Pereira, Paulo César Silva, M Wayne Davis

    bioRxiv : the preprint server for biology
    |November 1, 2024
    PubMed
    概括

    引入了一种新的检查和方法,SEGUID v2,以独特识别DNA和RNA序列,包括圆形和双链形式. 这一进步确保了合成生物学研究和序列数据库的数据完整性.

    科学领域:

    • 合成生物学 合成生物学
    • 生物信息学是一种生物信息学.
    • 分子生物学分子生物学

    背景情况:

    • 合成生物学依赖于将DNA碎片结合起来进行研究.
    • DNA 序列通常以等离子体的形式分布,因此需要对数据完整性进行检查.
    • 密码检查像SEGUID一样,有助于验证序列和注释.

    研究的目的:

    • 扩展SEGUID检查和来处理各种DNA和RNA序列类型.
    • 为解决原始SEGUID对圆形和双链核酸的局限性.
    • 开发一种可靠的方法,用于独特的序列识别.

    主要方法:

    • 开发了SEGUID v2,这是原始SEGUID算法的扩展.
    • 实现了各种序列结构的定向和旋转不变性.
    • 利用了SHA-1哈希的Base64url编码,以提高兼容性.

    主要成果:

    • SEGUID v2生成线性,圆形,单链和双链DNA/RNA的独特检查和.
    • 由于Base64url编码,检查和值与文件名和URL兼容.
    • 该方法支持各种序列类型的可定制字母.

    更多相关视频

    Rare Event Detection Using Error-corrected DNA and RNA Sequencing
    10:36

    Rare Event Detection Using Error-corrected DNA and RNA Sequencing

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    Genome-wide Surveillance of Transcription Errors in Eukaryotic Organisms
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    Genome-wide Surveillance of Transcription Errors in Eukaryotic Organisms

    Published on: September 13, 2018

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    相关实验视频

    Last Updated: Jun 8, 2025

    CIRCLE-Seq for Interrogation of Off-Target Gene Editing
    08:23

    CIRCLE-Seq for Interrogation of Off-Target Gene Editing

    Published on: November 1, 2024

    532
    Rare Event Detection Using Error-corrected DNA and RNA Sequencing
    10:36

    Rare Event Detection Using Error-corrected DNA and RNA Sequencing

    Published on: August 3, 2018

    12.0K
    Genome-wide Surveillance of Transcription Errors in Eukaryotic Organisms
    09:30

    Genome-wide Surveillance of Transcription Errors in Eukaryotic Organisms

    Published on: September 13, 2018

    9.5K

    结论:

    • SEGUID v2 为序列检查和提供了通用解决方案,增强了数据完整性.
    • 新方法克服了对复杂核酸结构的先前方法的局限性.
    • 在主要的编程语言和平台上可以访问SEGUID v2.