固有无序蛋白质的凝结物中的动力学异质减速
Saumyak Mukherjee1, Lars V Schäfer1
1Center for Theoretical Chemistry, Ruhr University Bochum, 44780 Bochum, Germany.
The journal of physical chemistry letters
|November 1, 2024
概括
生物分子凝结物限制蛋白质,改变它们的动态. 分子动力学模拟显示,在凝结物中,大型蛋白质的运动显著减慢,而较小的运动基本上不受影响,这表明类似液体的环境.
科学领域:
- 生物物理学的生物物理.
- 分子生物学分子生物学
- 蛋白质动力学 蛋白质动力学
背景情况:
- 生物分子凝聚物是通过液-液相分离形成的密集的细胞区.
- 凝结体内的拥挤环境会影响蛋白质的结构动态和功能.
- 了解这些影响对于理解细胞组织和调节至关重要.
研究的目的:
- 研究生物分子凝聚物中自我拥挤对蛋白质动态运动的影响.
- 描述不同类型的蛋白质运动如何受到凝结相环境的影响.
主要方法:
- 使用了原子分子动力学 (MD) 模拟.
- 模拟的重点是人类化在肉瘤 (FUS) RNA结合蛋白的内在混乱的低复杂性域 (LCD).
- 在凝结阶段和稀释阶段的蛋白质动态之间进行了比较.
主要成果:
- 与稀释阶段相比,凝结物中的蛋白质动力学显示出异质的减速.
- 大幅度的运动显著减速,高达两倍.
- 小规模的运动,包括局部骨干波动和侧链旋转,受到凝结物环境的影响较小.
结论:
- 生物分子凝结物表现出一种类似液体的特性.
- 蛋白质运动对凝聚环境的反应是不同的,较大的运动更敏感.
- 这些发现有助于理解控制分相细胞区内的蛋白质行为的物理原理.
相关概念视频
Intrinsically Disordered Proteins
17.7K
Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
17.7K
Molecular Chaperones and Protein Folding
17.8K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
17.8K
Protein Folding
7.8K
Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
7.8K
Protein Diffusion in the Membrane
4.3K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
4.3K
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
807
At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
807
¹H NMR: Interpreting Distorted and Overlapping Signals
1.0K
Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are...
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are...
1.0K


