依赖NusG的RNA聚合酶暂停是 рибо开关调节机制的一个共同特征
Oshadhi T Jayasinghe1, Laura E Ritchey1,2, Thomas Breil1
1Department of Biochemistry and Molecular Biology, Center for RNA Molecular Biology, 203 Althouse, Pennsylvania State University, University Park, PA 16802, USA.
Nucleic acids research
|November 4, 2024
概括
细菌RNA聚合酶暂停,由NusG调节,微调核糖突变基因表达. 这种暂停机制使细胞能够感知到更广泛的连接体度范围,以精确控制转录衰减.
科学领域:
- 分子生物学分子生物学
- 基因规则 基因规则
- 细菌的转录 细菌的转录
背景情况:
- 通过RNA聚合酶转录涉及暂停,这允许RNA折叠和调节因子结合.
- 在Bacillus subtilis中,依赖于NusG的暂停很普遍,其中许多位于5'领导区域,表明其具有调节作用.
研究的目的:
- 为了调查停顿是否是 рибо开关机制的共同特征.
- 确定NusG-依赖性暂停在 ribo-switch介导的转录衰减中的作用.
主要方法:
- 在已知的核糖切换器 (fmnP,tenA,mgtE,lysP,mtnK) 中对NusG依赖性暂停的分析.
- 试管体内转录试验评估暂停对终结频率和连接体度的影响.
- 使用转录融合的体内表达研究证实了停顿在 рибо开关功能中的作用.
主要成果:
- 依赖于NusG的暂停在里博开关中被战略定位,在反终结器/终结器结构决定之前.
- 暂停在相关联体的存在下增加了终结频率,并降低了有效终结所需的联体度.
- 在体内研究证实,依赖于NusG的暂停对于 рибо开关机制的功能至关重要.
结论:
- 依赖于NusG的暂停是一种关键机制,使得核糖开关能够微调转录衰减.
- 暂停允许细胞感知到更广泛的联结体度范围,从而改善对基因表达的控制.
相关概念视频
Riboswitches
8.1K
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
8.1K
Transcriptional Regulation: Riboswitches
3
Riboswitches are RNA elements that regulate gene expression by altering their secondary structures in response to specific effector molecules. These elements, located in the leader regions of certain mRNAs, act as transcriptional regulators by toggling between alternative conformations to control downstream gene expression. Riboswitch-mediated regulation is a precise mechanism for modulating biosynthetic pathways, as exemplified by the riboflavin biosynthesis pathway in Bacillus...
3
Types of RNA
63.3K
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
63.3K
Translational Regulation
1
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
1
Bacterial RNA Polymerase
29.0K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
29.0K
Nonsense-mediated mRNA Decay
10.6K
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
10.6K


