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Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
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Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
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For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
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反平行G-四边形形成阻碍转换到平行拓.

Jianjun Xia1, Jielin Chen1, Jiahang Zhou1

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The journal of physical chemistry. B
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G-四复合体 (G4s) 的折叠是复杂的. 反平行G4中间体减缓了平行G4的形成,特别是在较低的温度下,尽管离子可以加快这种转化.

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科学领域:

  • 生物化学 生物化学
  • 分子生物学分子生物学
  • 结构生物学 结构生物学

背景情况:

  • G四复合体 (G4s) 是具有不同生物作用的关键核酸结构.
  • 了解G4折叠机制对于其应用至关重要,但仍未完全阐明.

研究的目的:

  • 在溶液中研究特定的富G序列d[(G3T2) 3G3的折叠过程.
  • 确定折叠中间体对整体G4折叠动力学和热力学的影响.

主要方法:

  • 停止流动的动力分析,以监测折叠路径.
  • 研究了和离子对折叠中间体和速率的影响.
  • 分析了温度依赖的折叠动力学.

主要成果:

  • 序列d[(G3T2) 3G3]形成一个平行G4结构,可能通过一个反平行中间体.
  • 反平行G4形状迅速形成,但慢慢转换为稳定的平行形状.
  • 这种中间路径比直接折叠慢,并且取决于温度.
  • 离子加速从反平行到平行G4结构的转换.

结论:

  • G4折叠涉及竞争性途径,中间产品显著影响整体折叠率.
  • 反平行G4中间体作为动力陷,减缓了热力学偏好的平行结构的形成.
  • 离子特异效应 (K+与Na+) 调节G4折叠动态,突出了这些结构在生物环境中的复杂性.