一起更好:合作如何影响转录突破
Charis Fountas1, Tineke L Lenstra1
1Division of Gene Regulation, the Netherlands Cancer Institute, Oncode Institute, Plesmanlaan 121, 1066 CX Amsterdam, the Netherlands.
Current opinion in genetics & development
|November 5, 2024
概括
转录突破,一个关键的基因调节过程,是由转录因子动态驱动的. 这篇评论探讨了因子结合,相互作用和3D基因组组织如何影响基因表达爆发.
科学领域:
- 分子生物学分子生物学
- 基因规则 基因规则
- 生物物理学的生物物理.
背景情况:
- 转录性爆发描述了细胞能够随机地打开和关闭基因表达的能力.
- 这个过程受到转录因子结合,协同激活剂相互作用和基因组的3D结构的影响.
- 了解这些动态对于理解基因表达变异至关重要.
研究的目的:
- 审查最近在理解转录因子和辅因子的动力学方面的进展.
- 探索这些动态对各种监管环境中的转录突破的影响.
- 讨论转录因子交换,合作模式,增强剂和转录凝聚物的作用.
主要方法:
- 对最近对转录因子和辅因子动态的见解进行文献综述.
- 分析理论模型,包括合作性和转录因子交换.
- 讨论活细胞成像研究,调查增强剂和凝聚剂调节.
主要成果:
- 转录因子和辅因子动态显著调节转录突破的动力学.
- 转录因子交换的概念为基因调节提供了新的视角.
- 增强剂和转录凝聚剂在调节爆破动态方面发挥着关键作用.
结论:
- 在促进剂水平上分子相互作用的动力学是转录突破的核心.
- 整合动力学,3D基因组组织和分子相互作用提供了对基因调节的全面了解.
- 未来的研究应该专注于活细胞成像和先进的建模,以进一步阐明这些复杂的过程.
相关概念视频
Cooperative Binding of Transcription Regulators
6.4K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.4K
Co-activators and Co-repressors
7.3K
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
7.3K
Prokaryotic Transcriptional Activators and Repressors
8.3K
8.3K
RNA Polymerase II Accessory Proteins
9.1K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.1K
Eukaryotic Transcription Activators
10.9K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
10.9K
Transcriptional Regulation: Riboswitches
3
Riboswitches are RNA elements that regulate gene expression by altering their secondary structures in response to specific effector molecules. These elements, located in the leader regions of certain mRNAs, act as transcriptional regulators by toggling between alternative conformations to control downstream gene expression. Riboswitch-mediated regulation is a precise mechanism for modulating biosynthetic pathways, as exemplified by the riboflavin biosynthesis pathway in Bacillus...
3


