使用结构化本体模型,图形神经网络和大型语言模型从科学出版物中提取知识的准确和有效方法
Timofey V Ivanisenko1,2, Pavel S Demenkov1,2, Vladimir A Ivanisenko1,2
1The Artificial Intelligence Research Center of Novosibirsk State University, Pirogova Street 1, Novosibirsk 630090, Russia.
International journal of molecular sciences
|November 9, 2024
概括
本研究引入了混合图神经网络 (GNN) 和大语言模型 (LLM) 方法来增强生物医学知识图. 它有效地发现复杂疾病的潜在分子相互作用,加速治疗目标的发现.
科学领域:
- 生物医学信息学 生物医学信息学
- 计算生物学 计算生物学
- 人工智能在医学中的应用
背景情况:
- 生物医学文献的指数增长给研究人员带来了挑战,让他们保持最新的知识.
- 由于语义和上下文理解有限,传统的文本挖掘方法缺乏准确性.
- 深度学习模型虽然强大,但在计算上可能昂贵,缺乏可解释性,大型语言模型 (LLM) 容易产生幻觉.
研究的目的:
- 开发一种混合方法,结合文本挖掘,图形神经网络 (GNN) 和微调的LLMs.
- 通过预测和解释分子相互作用来扩展生物医学知识图.
- 用LLM验证预测,并根据已发表的文献提供解释.
主要方法:
- 开发了一个混合模型,集成文本挖掘,GNN和LLM.
- 该方法在经过实验确认的蛋白质相互作用的集合体上进行了评估.
- 使用LLM进行预测验证并生成基于文献的解释.
主要成果:
- 混合GNN-LLM方法在蛋白质相互作用数据上实现了0.772的马修斯相关系数 (MCC).
- 该方法在32种与失眠相关的人类蛋白质中发现了25种新的相互作用,包括关键的调节和结合相互作用.
- 确定的相互作用涉及涉及神经疾病和昼夜节律调节的蛋白质.
结论:
- 混合GNN-LLM方法提供了一种有效的方式来分析生物医学文献的潜在分子相互作用.
- 这种方法可以通过优先考虑专家审查,加速发现复杂疾病的治疗点.
- 该研究表明,将GNN和LLM结合起来,有助于推动生物医学知识发现的潜力.
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